Cyclopterus lumpus (lumpfish): 117749692
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Entry
117749692 CDS
T09199
Symbol
pan3
Name
(RefSeq) PAN2-PAN3 deadenylation complex subunit PAN3 isoform X1
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117749692 (pan3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clum03019
]
117749692 (pan3)
Messenger RNA biogenesis [BR:
clum03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117749692 (pan3)
mRNA degradation factors
3'-5' decay
Pan complex
117749692 (pan3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pan3_PK
zf-CCCH
zf_CCCH_4
zf-CCCH_4
Torus
Pkinase
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
117749692
NCBI-ProteinID:
XP_034416284
Ensembl:
ENSCLMG00005021822
LinkDB
All DBs
Position
20:8881160..8895646
Genome browser
AA seq
827 aa
AA seq
DB search
MDSDNNDDQDFTHAKIFSQTQMHLSLIISGGGSSGAMNSGLPASAAPLGGAGIPNVKVKF
CRYYAKDKTCFYGEECQFLHEDPSMSSLPLHGGGSPVPLSMAGGGGTPAVYSLGGSVAAC
PGSAGTGVSKKSETMGPAGASLDGQLLTIPGMEGATLSDANLTNSYFSSSFIGVNGFGSP
AETKYSMMQRMTTSSSSPSLNDGAKNFSHSTHEPVNSPTSSLFSDFGALNISQRRKTPNP
AASEFIPKGAPRMPTMVQSPVQAFPSPLFPHPGLSSSTAAALAPGMSLSAGSSPLHSPKI
TPHTSPAPRRRSHTPNPANFMVPTTAADQGPHMIQKETVGGTTYFYTDNTPAPMAGMVFP
TYHIYPPTAPHVAYMQPKANAPSFFMADELRQELINRHLITMAQIDHSENPDVPSEVDSY
HSLFPLEAVPPPNRMQKTSNFNYITSCYKAVNSKDDLPYCLRRIHGFRLVNTKCMMLVDM
WKKIQHSNAVTLREVFTTKAFGDHSLVFSYDFHAGAETMFSRHFNDPAADSYFTKRKWGQ
HEPPPPRQHAGLLPESLIWAYIVQLSSALRTIHTAGLACRVMDPSKILITGKTRLRLNCV
GVFDVLTFDNSQTNHLALMPQYQQADLVSLGKVVLALACNSLAGIQRENLQKAMELVSIN
YSSDLKNLILYLLTEQSRLRSVNDIMPMIGARFYTQLDASQMRNDVIEEDLAKEVQNGRL
FRLLAKLGTINERPEFQKDPTWSETGDRYLLKLFRDHLFHQVTEAGTPWIDLSHIVSCLN
KLDAGVPEKISLVSRDEKSVLVVTYSDLKRCFDSTFQELHGAASGSL
NT seq
2484 nt
NT seq
+upstream
nt +downstream
nt
atggatagcgacaacaacgacgaccaggatttcacgcatgcaaagatattttctcaaacc
caaatgcatcttagccttataatcagcggtggcggcagcagcggtgccatgaacagtgga
ctcccagcctcagctgctccgcttgggggtgccggaatacccaatgtcaaggtgaagttt
tgccgatattacgcgaaagacaaaacctgtttttatggagaagagtgccagtttctgcac
gaagatccgtccatgtcgagcctgccgctgcacggtggcgggagccccgtaccgttgtcg
atggccggaggtggcgggaccccagcggtgtattccctcggcggctctgtagcggcctgt
ccgggaagcgcgggcaccggtgtgtccaagaaaagtgaaacaatgggtcccgcaggcgca
tctctagatgggcagctgttaacaatcccagggatggagggtgcaaccctgagtgatgcc
aatctaaccaactcttacttcagcagcagctttattggggtcaatgggtttggaagccca
gcagagactaaatactcaatgatgcagcgaatgactaccagcagcagctctcccagcctc
aacgatggtgccaagaacttcagccacagcactcatgaaccagtgaactctccgacatcc
tcactgttcagtgattttggtgctcttaatatttcccaaaggagaaagactcctaacccg
gcagcaagtgagttcatccctaagggagctccacgtatgcccactatggttcagtcccct
gtccaggccttcccctcgcctctcttcccacatcctggcctcagcagctccacagctgct
gccctcgctcctggcatgtctctttctgcgggatcttctcctctccactccccaaaaatt
acaccgcacacctcacctgctccacgtcggcgcagtcacacaccaaaccctgccaacttc
atggtgccaacaactgcagctgatcagggtcctcatatgatccagaaagaaactgtaggg
gggacgacctacttctacacggacaacactccggcaccaatggctgggatggtgtttcct
acataccatatctatccccccactgcgccccatgtggcttacatgcagccaaaagctaat
gccccgtccttcttcatggcggatgaactccgacaggagttgataaacagacatctgata
accatggcccagattgaccactcggagaacccagatgtaccctctgaggtcgacagctac
cacagcctgttcccgctcgaggccgtccctccaccaaaccgcatgcagaagaccagcaac
ttcaactacatcacctcctgctacaaggctgtcaacagcaaggatgacctgccttactgc
ctgaggaggatacacggtttccgccttgttaacaccaagtgtatgatgctggtggacatg
tggaagaaaattcagcactcaaacgccgtaacactgagagaggtcttcaccacgaaggcc
tttggagaccactcgttggtgttctcctatgacttccatgcgggtgcagaaaccatgttc
agcagacacttcaatgacccagcagcagattcctactttaccaagagaaagtggggacaa
cacgaacctcccccgccacggcagcatgcaggtttgctccctgagtctctgatctgggcc
tacattgtccagctcagctcggccctgcgcaccatccacactgccggcctggcctgccgt
gtcatggaccccagcaagattcttatcactggcaagacaaggttgcgattgaactgtgtc
ggggtgtttgatgtcttaacttttgacaacagccagaccaatcatcttgccctaatgcca
cagtaccagcaagcagaccttgtgtcgctgggaaaggtggtgctggccttggcatgtaac
tcattggctggtattcaaagggagaacctgcagaaggccatggagctggtgtctatcaac
tactcttcagacctcaagaacctcattctgtatctgctgactgaacaatctcgcctgcgc
agcgtcaatgacattatgccgatgattggagctcgattctacacacaactggatgcgtcg
cagatgaggaacgatgtcattgaggaggatctggccaaggaggtgcaaaacggtcgtctc
ttccgcctgttggccaaactgggcaccatcaacgagcgaccagagtttcagaaagacccg
acatggtcagagacgggcgaccgttacctgttgaagcttttccgggatcacctgtttcac
caggtgacggaagctgggacgccctggatcgacctcagccacattgtctcctgcctcaac
aaactggacgctggcgttcctgagaagatcagcctggtgtcgcgggatgagaaaagcgtc
ctggtcgtgacctactcggacctgaagcgttgcttcgacagtaccttccaggagctgcac
ggtgcagcctccggctctctgtag
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