Cyclopterus lumpus (lumpfish): 117749750
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Entry
117749750 CDS
T09199
Symbol
chd9
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 9 isoform X1
KO
K14438
chromodomain-helicase-DNA-binding protein 9 [EC:5.6.2.-]
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
clum03036
]
117749750 (chd9)
Chromosome and associated proteins [BR:
clum03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
117749750 (chd9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
BRK
Helicase_C
Chromo
DEAD
HTH_Hrp3
HDA2-3
Chromo_MIT1
Motif
Other DBs
NCBI-GeneID:
117749750
NCBI-ProteinID:
XP_034416374
Ensembl:
ENSCLMG00005008933
LinkDB
All DBs
Position
3:22448740..22512879
Genome browser
AA seq
3009 aa
AA seq
DB search
MDFFSDPNLFVGGLDGLDEDGFPSAPSLVDELNLTADFEPLQVEPLDPGKHQALMPPVTT
QQAMPSYSQQMGHYIGIKAQTPMGQPFTGPGGTGGTGGGGGGMIADQHVQYHNAAMSQVP
QSNGLFCNSSSPMWGNQDQNGNMYHPLSQPQQQLCQQQQQQLHNQQLHVGQQQTQQQQHH
PCHQQQREQQRRMQQQQQLQQQQQRHQQQLLNQRQHQQINTQTMSLQQPQHHNFSFHQRG
QSQSQQQVHHTQQQVQHQLTVGGPRFHSRAMPSKSYLNSQNAILSGTCLQLPPQQGSYQL
TRGGQTFSGSGSEDPNLTFPMHSSPMVHSLPICSVSSATVYQAAQYPAYPGEPEIPSLSQ
QSTSSGSMPNTTIVPLTSAVPELPGTVCQFPSTAVMRNQADECAFRALHCSGETQGNKSS
EMFGESMNCFPSMASQLPSEQPRSCRAINTNGYQALGDTLLPSKAGDLEGLEPPDLLPDL
LPQLEAALSQQDESNCSWVDSSQEKGHEHSKPPPVEYKQEKPRKNANGPGSQVRVLSPPV
KSSSSSSSSSSSSPSSSSSSSEKRTPRRTQHQMEAATQDKQEKANRIISEAIAKARQRGE
KNIPRVMSPESFPSSSSQYKHRKREHKGNGKARTKGKACRKACIIPSSKPNKKAKIGKIV
IKIGKRKKRKPESSEESNDDPPPRHAAKDDDSKRRSNRQVKRKKYAEELEARLSDDEVKA
IVKAKKTGTAGSKQPAVQLFVENPSEEDAAVVDKIMSSRIVKTEVSPGVVVEGEEFFVKY
KNYSYLHCEWATEQQLVKDKRIQQKIKRFKMKQAQRALFFADMEEDPFNPDYVEVDRVLE
VSYCEDKDTGEEVVYYLVKWCSLAYEDSTWELKDDVDQSKIEEFEQLQAVKPDSRRTERP
PANQWKKRDQSREYRNGNSLRDYQLEGVNWLLFNWYNRRNCILADEMGLGKTIQSITFLQ
EILRVGIKGPFLIIAPLSTIANWEREFRSWTYLNVIVYHGSMVSRQMLQQYEMYFRDAQG
RVMRGNYRFQALITTFEMILGGCPELNAIEWRCVIIDEAHRLKNKNCKLLEGFKLMNLEH
KVLLTGTPLQNTVEELFSLLHFLEPARFPSENPFMQEFGDLKTEEQVQKLQGILKPMMLR
RLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFTFLAKGAGQANMPNLVNTMMEL
RKCCNHPYLIKGAEEKILEDFREVYSPTAMDFHLQAMVQSAGKLVLIDKLLPKMKAGGHR
VLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPESERFVFLLCTRA
GGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLITRNSYEREMFDRA
SLKLGLDKAVLQSMSGRDNSLGGGAGGGAAQQQQQQLSKKAIEDLLRRGAYGAIMDEEDE
GAKFCEEDIDQILQRRTKTITIESEGRGSTFAKASFVASGNRTDISLDDPNFWDKWAQKA
DIDMEMANGRNSLVIDTPRVRKQTRPFSATKDELAELSEGNSESDDTKPKLRRNHDRLNS
YGRTECFRVEKNLLVYGWGRWKDILNHGRFKKQLAERDVETICRALLSYCLVHYRGDDKI
KSFMWDLIAPTEDGRTKELQNHLGLSAPVPRGRKGKKVKIQSSSFDIHKAEWLRKHNPEH
MLQDDGYKKHLKHHCNKVLLRVRMLYYLKQEVIGSQAQRVLDGVESSDIKIWVPDPDHSE
LPALWWDAICDKCLLLGVYKHGYEKYNTLRADPTLCFLERVGRPDEKAIAAEQRGNDFMD
GDVDDPEYKPAPALLKDDMEDDASSPGDLVVTDNAGDAVPVTGGETSYWPSPSVLTARLR
RLITASQRYTKSRQILQIHQIHQTQSPSPSTMIMSAPLCPLPPSFNDTLNPKMVAKIERQ
QRWTRREEADFYRVVSTFGVVFDPNLGRFDWTKFRAMARLHKKTDESLQKYLCAFTAMCR
RVCRLPPKEGDSAVDPSLTLLPITEERASRTLYRVELLRQVREQVLCHQLLYERLPLCQM
SSDLTVWWEAGTHDRDLLIGAAKHGVSRTDYHILRDPELSFMAAQRNYSQTKAALHKSRT
STPLLHPQCQATSSVLTASPLPPPAQRETEPSGLVPKVEPASEGEEGMEKQGESWSPPPA
PATPTGLEEKPLSEVSEKERQMVAARTKPLTPNSSERKPKKASKRSRKEARRGSESDPGD
SSSSSSSRSSSSSSSSSSSSHSGSSSSSSSSGSSGSSSSSSSSSSSDGSESEGEEGKKKV
AAATSVKGFDEDSVASLITTQDETHDIHAAENGITNNSSHPFQGYMLAASYWPKDRVIIN
RLDSICQAVLKGKWPGTRRVYEPGGAVASFYTTKLLDNANSLCEDPSASPQGSKVTKHVA
ENKEFSVKLNDQEGSLKLTFQKQGLPLKRPLESEEGPQAQQQYLARLHELQSASDTGLAD
ITKPQCSFQTAPPGLTGQMRLNGVLDGQPLVKRRRGRRKNVEGMDLLFMNRSRVPSVPDQ
VPPGWGGIGQVGAAGDSVPGLSQSANQVPGDTDSRVPVINLQDGTRLAGDDAPRRKDLEQ
WLMEHPGFVADTGAFIPGVNKMQMQFHFQDGRPKQKRHRCRNPNKIDVNSLTGEERVQII
NRRNARKVGGAFAPPLKDLCRFLQENPEYGVPPEWADVVKQSGYLPESMFDRILTGPIVP
EEVSRRGRRPKNPLVKAVVAAASAAPNPAVSALGLNPLLANGILSGMDLTSLQALQQNLQ
SLQSLQLTAGLMGLPSDASNLAASNLAAMFPMMLSGMAGLPNLLGMSSLLGKPAQEGTGS
SEEKTKGAASGVTAEPSASKALAHTSDTKGERTEGSNMTPSSTSSFSSYATAPQSASAAS
AASSHPLSLNPVLLSSMLYPGMLLTPGLNLPVSATQPQSSNSDPTLPPARPAPPAVSQSS
PQEMERRAAERDGEEDDEALEDDDDDDDDDEEDSAEQKENSGPEGSGKAESSSSDSGGSS
SSDDSDSSD
NT seq
9030 nt
NT seq
+upstream
nt +downstream
nt
atggacttctttagtgaccctaacctctttgttggaggattggatgggctggacgaggat
ggcttcccctcagcaccatcacttgtggatgagctaaacctcactgctgattttgagccc
ctccaagtggagcctctagacccagggaagcaccaagccttgatgcctccagtcactacc
caacaagccatgccttcttacagtcagcagatgggtcactacattggcattaaggcgcag
actcctatggggcagccgtttactggtcctgggggcacaggaggtacagggggtggaggt
ggtggcatgattgcagaccagcatgtccaataccataatgctgccatgagccaagtacct
caatccaatgggctgttctgtaacagtagcagtccaatgtggggcaaccaagaccagaat
gggaatatgtaccaccccttatctcaaccgcaacaacagctttgtcagcaacagcagcaa
caactgcacaaccagcaacttcatgtcggacaacaacaaacacagcagcaacaacaccac
ccatgtcaccaacaacaacgggagcagcagcgcagaatgcagcagcaacagcagctgcaa
caacaacagcaaagacatcagcaacagctgttaaaccagcgccagcaccaacaaattaac
acacagactatgtccctgcagcagccgcagcatcacaatttctcctttcaccagagaggt
caatctcagagccaacagcaagttcaccatactcagcagcaggttcagcaccaattaaca
gtaggagggccaaggttccattcaagggctatgccaagtaagtcttatttgaatagtcaa
aatgctatactgagtgggacttgcttgcagcttccgccgcagcaaggtagctaccagttg
acaaggggaggtcaaaccttctctggatcaggatcggaagacccaaacctaaccttcccc
atgcattcttcaccgatggttcactctttgcccatatgctcagtcagttctgccacagtt
taccaagctgctcagtaccctgcctatcctggagagccagaaatacccagtctcagtcag
cagtccacatcctcggggtctatgcccaacaccaccattgtaccccttacttctgcagtg
cctgagctcccagggacagtatgtcagttcccatccacagcagttatgaggaaccaggca
gatgaatgtgctttccgggccctgcattgctctggagaaacccagggaaacaagtcatcc
gagatgtttggtgagtcaatgaactgcttccccagcatggccagccagctgccctctgag
cagcctcggagctgcagggccataaacactaatggataccaagcattgggagacactctc
ctgccatcaaaggctggagacttggagggcctggagcctcctgacctcctgcctgaccta
ctgccccagctggaggctgctctcagccaacaggatgaatccaactgttcctgggtcgat
tccagccaggagaagggacatgaacacagcaaaccaccacctgttgagtacaagcaagaa
aagcctcgaaagaacgctaatggtcccggtagccaggtacgggtcctcagccccccagtg
aagagcagctcatcgtcgtcctcctcttcctcatcgtctccatcctcatcgagctcctca
tcggagaagaggacgccacggaggacacagcatcagatggaggcagctacacaggacaag
caggagaaggccaatcggataatatcggaggctattgctaaggcccggcagcgtggggaa
aagaacatcccgagagttatgagtcctgagagtttccccagctcatcgtcacagtacaag
caccgtaaacgcgagcacaaaggaaatggcaaggcacggacgaaagggaaggcctgtagg
aaggcctgtattataccctcctccaagcccaataagaaggcaaagatcgggaaaattgtc
atcaaaattgggaagaggaagaaacgaaagccagagtcttcagaggagtctaatgatgac
cctccccctcgacacgctgctaaagatgacgactctaagaggcgatccaatcgccaggtg
aagagaaagaaatacgctgaagagctggaggccaggttgtcggatgatgaggtcaaggct
attgtcaaagccaagaaaaccggcaccgcaggatccaaacagcctgctgttcaactcttt
gtagagaatcccagtgaagaggatgctgctgtggttgacaaaatcatgtcttctcgtatc
gtcaagacggaggtttctccaggagtggtggttgaaggagaggagttttttgtaaaatac
aaaaactactcctacctacactgtgagtgggccacagagcagcagctggtgaaggacaag
aggattcagcagaagatcaaacgcttcaagatgaaacaagcacagcgggcactcttcttt
gcagatatggaagaggacccctttaacccggactatgtagaggtagacagagtgctggag
gtgtcttattgtgaggacaaagacacgggagaggaagtggtgtactacctggtgaagtgg
tgctctctggcttatgaggacagcacctgggagctgaaggacgacgttgatcagagcaag
attgaagagtttgagcagctgcaggcagtcaagccagactcgcgcaggacggagcggccc
ccggccaatcagtggaagaagagggaccagtcgagagaatacaggaatggcaacagcctc
agggactaccagctagaaggggtcaactggctcctgttcaactggtacaacagacggaac
tgcatcctggcagatgagatgggcctcggaaagaccatccagtccatcacattcctacaa
gagatccttcgtgtgggcattaaagggccattcctcatcattgctcctctctccactatt
gccaactgggagcgcgagtttcgttcttggacctatctcaatgtcatcgtctaccatgga
agcatggtcagcaggcagatgctccaacaatacgagatgtatttcagggatgcacagggc
cgtgtgatgcgaggtaactacaggttccaggcccttatcaccacgtttgagatgatcctg
ggaggatgtcccgaactcaacgccatcgagtggcgctgtgttatcatcgatgaggcccac
cgcctcaagaacaagaactgcaagctgctagagggcttcaagctcatgaacctggagcac
aaggtcctgctgacgggtactcctctccagaacacagtggaggagctcttcagcttgctc
cacttcctggagccggcacgcttcccctcagaaaaccccttcatgcaggaatttggagac
ctgaagactgaggagcaggtacagaagcttcagggaatcctgaagcccatgatgctgcgt
cggctgaaggaggacgtggagaagaagttggctcctaaagaggaaaccatcatcgaggtt
gagctaaccaacattcaaaagaaatactaccgcgccatcctagagaagaacttcaccttc
ctggctaaaggagctggccaggcaaatatgcccaacctggtcaacaccatgatggagctg
agaaagtgctgcaaccacccctacctcattaaaggagcagaggagaagatcctagaggac
ttcagggaggtgtacagccccactgcaatggactttcacctacaagctatggtgcagtct
gccgggaagctggtcctcattgacaaactgctgcccaagatgaaggccggagggcacagg
gtgctcatcttctcccagatggtgcgctgccttgacatcttggaagactacctcattcag
agaaggtacttgtatgagcgaatagatggacgtgttcgtgggaacctgcggcaggcagct
atcgaccgcttcagtaagcccgaatcggaacgctttgttttccttctgtgcacgagagct
ggtggcctgggaatcaacctcacagcagcagacacctgcatcatctttgactccgactgg
aacccacagaacgacttgcaggcccaggcccgctgccatcggatcggtcagaacaaagca
gtgaaggtgtaccgcctgatcaccaggaactcgtacgagcgagaaatgtttgatcgcgcc
agcctcaagctgggcctggacaaagcggtgttgcagagcatgagtggacgagataacagc
ctgggtggaggcgccgggggaggggcagcgcagcagcagcagcagcagctgtctaagaag
gcgattgaggatctgttgcggcgtggtgcatacggggccatcatggatgaagaggatgaa
ggagccaaattctgtgaggaggacatcgatcagattctccagcgcaggacaaagaccatc
accatcgagtctgagggaagaggatccacctttgctaaggccagctttgtggcgtctgga
aaccgcacagacatttctctggatgaccccaacttctgggacaaatgggcccaaaaggct
gacattgatatggaaatggcaaacggcagaaacagcttggtgatcgacactcctcgtgtc
agaaagcagacacggccgttcagtgccaccaaggatgagttggcagagctttcagagggc
aacagcgagagtgacgacaccaaacccaagctcaggcgaaaccacgaccgcctcaacagc
tatgggcgcacagagtgcttcagggtagagaagaacctgctggtttatgggtggggtcgt
tggaaggatattctcaaccatgggcgttttaagaagcagctggcagagagggatgtagag
accatttgcagggccctcctgtcttactgcctggtccattaccgtggagatgacaaaatc
aaaagcttcatgtgggacctgatagcccctactgaggacggacgcaccaaggagctgcag
aatcacctgggtttgtctgctcccgtccctcgtggcagaaagggtaagaaggtgaaaatc
cagtccagctcctttgatatccacaaagctgagtggcttcgaaaacacaacccagagcac
atgcttcaggacgacggttacaagaaacacctcaaacatcactgcaacaaggtgctgctc
agggtcagaatgctctactacctgaaacaagaggtgataggaagccaggcccagagggtg
ctagacggcgtggagtccagtgacataaagatatgggtcccagaccctgaccattcggag
ctgccagccttgtggtgggatgccatctgtgacaagtgtctgctgctgggtgtctataag
catggttatgagaagtacaacacactccgtgctgacccgaccctgtgcttcctagagcgt
gtggggcgacccgatgagaaggccatcgctgccgaacagagaggcaacgatttcatggat
ggggatgtggatgacccagagtacaagcctgctcctgctctgctgaaagacgatatggag
gatgatgcctcttctcctggggacttggttgtcactgacaacgccggagacgcagttcca
gtgacaggaggtgaaacttcctactggccatccccctcggtgctgacggccaggctgagg
cgactgatcacagcttctcagcgctacacaaagagccggcagatcctccagatccaccag
atccaccaaactcaatctccatctccgtcgaccatgataatgtctgctccactctgtccg
ctgcccccctcattcaacgacaccctcaaccccaagatggttgctaagattgaacggcaa
caaagatggaccaggcgagaagaagctgacttctaccgcgtggtctctacttttggtgtt
gttttcgacccaaaccttggccggttcgactggaccaagttcagggccatggctcggctg
cacaaaaagactgacgagagcctgcagaaatacctgtgtgcttttaccgccatgtgccga
agggtgtgtcgcctgccaccaaaagagggagactctgcggtggatccgtctctgaccctc
ctgcccatcacagaggagcgagcgtctcgtacactgtacagagtagagttgcttcgccag
gtgagggaacaggttctttgccatcagctactctatgagcgcctgccgttgtgccagatg
agctccgacttgaccgtgtggtgggaggctggtacccatgaccgtgatctgctaattgga
gctgccaaacacggcgtcagccgcacagattaccacattctgagagaccctgaactcagc
ttcatggctgcccaacgcaactacagccaaacaaaagctgcactgcataaatcccgcaca
tccaccccactgctacaccctcagtgccaggccaccagctcagtgctgacagcctctccg
ctgcctccacctgcccagagagagacggagcccagtgggcttgtacctaaagtggaacca
gcctccgagggggaggagggcatggagaagcagggggagagttggagccctcctccagca
ccagctactcccacaggtctggaggagaagcccttgtctgaagtgagtgagaaagagagg
cagatggtggcggcacgaaccaaaccgctcacacccaactcctctgagaggaaaccgaag
aaggccagcaagaggagccgcaaggaggctaggcggggctcagagtccgacccaggtgac
tcctcctcaagctcttcctcgcgttcttcctcctcttcctcctcctcttcgtcctcgtca
cattccgggtccagctcctcctcctcatcatctggctcctctggctcttcatcatcatcg
tcctcctcctcatcttctgatggcagtgaaagtgagggagaggaagggaagaagaaagtg
gctgcagcaacaagtgtaaagggctttgatgaggacagtgtggcgtctctgatcacgacg
caggatgaaacccatgacatccatgcagccgagaacggcatcaccaacaactcctcccat
cctttccagggatacatgctcgctgcatcctactggccaaaggatcgcgtgatcatcaac
cgcctggacagcatctgccaggcggtgctaaagggcaagtggcccggaacacgtcgggtc
tacgagcctggaggtgcagtggcctccttctacaccaccaagctgctggacaacgccaac
agcctgtgcgaggacccctctgcctcaccacaggggtcaaaggtgaccaagcatgttgca
gaaaacaaggagttctcagtaaaactcaacgatcaggagggaagtctgaagttgaccttc
cagaaacaaggtctacctctgaagaggcccctggagtccgaggagggcccccaggcccag
cagcagtacttggcacggcttcatgagctgcagagcgcctcggacacaggcctggctgac
atcaccaagcctcaatgcagcttccagacagcgcctccaggtcttactggtcagatgaga
ctgaacggagtactggatggtcagccgctggtgaagaggcggaggggaaggaggaagaac
gtggaggggatggacctgctcttcatgaacaggagtagagtcccttctgttcctgatcag
gtgcctccaggatggggcggtattggccaggtgggcgcggctggggattctgtgccgggc
ttaagccagagcgccaatcaggtccccggggataccgacagcagggtccccgtcatcaac
ctccaagatggcaccaggcttgctggggatgatgctcccaggaggaaagaccttgaacag
tggctaatggagcaccctggctttgtggcagatacaggagcttttatccctggtgtaaat
aagatgcaaatgcagttccacttccaggacgggcggcccaagcagaagaggcaccgctgc
aggaaccccaacaagattgatgtgaacagtctgaccggagaggaaagagttcagatcatc
aacaggagaaatgcccgcaaggttggcggcgcctttgctcctcccctgaaggatctgtgt
cggttccttcaggagaaccccgagtacggagtcccacctgaatgggctgacgtggtcaaa
cagtcgggttaccttccagagagcatgtttgacagaatcctgacgggacccatcgttcct
gaggaggtgagccggcgtgggcgtcgacctaagaatcccctggtcaaggcggtggtggcg
gcagcttcagcagcccccaacccagcagtctccgccctgggcctgaaccccctgctggcc
aacggcatcctctctgggatggacctgaccagcctgcaggccttgcagcaaaacctccag
agcttacagtccctgcagctcaccgcgggcctgatggggctgccgtccgacgctagcaac
ctggctgcaagtaacttggctgccatgtttcccatgatgctgtctggtatggctggattg
ccaaacttactgggcatgagtagcttgcttgggaaacctgctcaggagggcacaggaagc
tctgaggagaagacaaagggagccgccagcggtgtaacagcagagccgtctgcctctaaa
gccctcgctcacacctcagataccaaaggagaaaggacagaggggtcgaacatgactcct
tcttccacttccagcttctcttcctatgccaccgccccacaaagtgcttcagctgcctct
gcagcctccagtcacccactgtctcttaaccccgtgttactctccagtatgctttaccca
gggatgcttctcactccaggccttaaccttcctgtgtctgccacacagccgcagagctca
aacagtgaccccaccctccctcctgctcgtcctgctccgcctgcagtctcccagtcatcg
ccacaggagatggagcggcgagcagcagagagggacggagaagaggatgacgaggcatta
gaagatgatgatgatgacgacgacgacgacgaagaggactctgctgaacaaaaggagaac
agtggtcccgagggttcggggaaagccgagtcatcttcatccgactccgggggctcttct
tcatcggatgattcagactctagtgattag
DBGET
integrated database retrieval system
