Cyclopterus lumpus (lumpfish): 117750042
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Entry
117750042 CDS
T09199
Symbol
sf3b1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117750042 (sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
clum03041
]
117750042 (sf3b1)
03036 Chromosome and associated proteins [BR:
clum03036
]
117750042 (sf3b1)
Spliceosome [BR:
clum03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
117750042 (sf3b1)
Complex B
117750042 (sf3b1)
Complex C
U2 SnRNP specific factors
117750042 (sf3b1)
Chromosome and associated proteins [BR:
clum03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
117750042 (sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
GST_N_4
DUF2298
Motif
Other DBs
NCBI-GeneID:
117750042
NCBI-ProteinID:
XP_034416785
Ensembl:
ENSCLMG00005017761
LinkDB
All DBs
Position
21:complement(4710698..4723217)
Genome browser
AA seq
1318 aa
AA seq
DB search
MAKIAKTHEDIEAQILEIQGMKATLLEEGEQGVGLDSTGFFDQEIYGGSDSRFAGYVTSI
AANEQEDDEEEDSSTSLLGQKKPGYHAPVAILNAIPQSDEQYDPFAEHRPQKIAEREDEY
KARRRQMIISPERLDPFADGGKTPDPKLQVRSYVDVMLEQNLSKEEREIRLQMVEKAKAG
ELKVVNGSAASQAAAKRKRRWDQTADQTPTNTTPKKMSSWDQADSSAETPGHTPGHTPAH
TPSNSRWDETPGRAKGSETPGATPSTRMWDPTPSHTPAGAATPGRDTPGHATPGHGGATG
SVRKNRWDETPKTERETPGHGSGWAETPRTDRGDESVGETPTPGASKRKSRWDETPASQM
GSSTPLLTPGKTPIGTPAMNMATPTPGHLMSMTPEQLQAWRWEREIDERNRPLTDDELDA
MFPEGYKVLPPPAGYVPIRTPARKLSATPTPLGGMTGFHMQVEDRTTKQMNDQPSGNLPF
LKPDDIQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREF
GAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDED
YYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLP
FLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISA
LAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYT
REVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALD
RRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDH
KLEEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAK
VRQQAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGM
HKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELL
KAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF
TVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQ
TASAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRM
LQYCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPQVYNDDKNMYVRYELDYAL
NT seq
3957 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaaaacgcacgaagacatcgaggcccagatcctggagatccagggg
atgaaggcgaccctgctggaggaaggagagcagggagtgggcctcgattccaccggcttt
tttgaccaggagatctacggaggcagcgacagccgctttgctggatatgtcacgtccatc
gcggccaacgaacaggaagatgatgaggaagaggattcgtcgacaagcttgttgggacaa
aagaagcccgggtaccatgccccggtggcaatactcaacgccattcctcagtcagacgag
caatacgacccatttgcagagcatcgtccgcagaagattgcagagcgagaagatgaatac
aaagctcgacgcagacagatgatcatctcaccggagcgcctcgacccttttgcagatggg
ggcaaaacgccggaccccaagctgcaggtcaggtcgtacgtggacgtcatgttggagcaa
aacctgtccaaagaggagagggagatccgtctgcagatggtagagaaggccaaagctggg
gagctgaaggtcgtcaacgggtccgctgcctcgcaggctgccgcgaaacgtaaacgtcgc
tgggaccagaccgctgaccaaacccccacaaataccacacccaaaaagatgtccagctgg
gaccaagctgattcgtctgctgagactccaggacacaccccgggacacactcctgcacac
acaccctcaaacagccgatgggacgaaacccctggtcgcgctaagggcagtgagaccccc
ggggccactcccagtacccgcatgtgggatcccactcccagtcacacacccgctggcgcc
gccacccctggcagggacacgcctggccacgccacgcccggccacggcggcgccacgggg
agcgtacgcaagaaccgctgggacgaaaccccgaagacggaaagggagaccccgggacac
ggcagcggctgggccgaaacgccacgcacagacagaggggacgagtcggtgggcgagact
ccgaccccgggggccagtaagaggaagtctcgctgggatgagacccctgccagtcagatg
ggatcctctacaccactactgaccccgggaaaaactcccataggaacgccagctatgaac
atggcgaccccaacaccaggtcacctgatgagcatgactccagagcagctgcaggcgtgg
aggtgggagcgggagattgatgagcggaaccggcctctcacagacgatgagcttgacgcc
atgttcccagagggatacaaggtgttgccgccaccggcgggctacgtgccgatccgcacc
ccggcccgtaaactgtcagccaccccaacgcccctcggaggcatgacgggcttccacatg
caagtggaggaccgcaccaccaaacagatgaatgaccagccctcaggaaacctgcccttc
ctcaagcccgacgacatccagtatttcgacaaactgctggtggaggtggatgagtccacg
ctgagccccgaggagcagaaggagaggaagatcatgaagctgctgctgaagattaaaaat
ggaacaccgcccatgagaaaggccgctctgcgtcagatcacggataaagctcgcgagttc
ggagccggcccgctgttcaatcagatcctgccgttactcatgtcgcccaccctggaggac
caggagcgccacttgctggttaaagtcatcgaccgcattctctacaaactggatgacttg
gttcgaccgtacgtacacaagatcctggtggtgatcgagcccctgctgatcgatgaggac
tactacgccagagtagaaggccgagaaatcatctctaacttggcaaaggccgccggtttg
gccaccatgatctccacgatgaggcccgacatcgacaacatggacgagtacgtcagaaac
accacggcccgagccttcgccgtggtggcctccgctctgggcattccctccctcctgccg
tttctcaaagccgtgtgtaaaagcaagaagtcctggcaggccagacacacgggcatcaag
atcgtgcagcagatcgccatcctcatgggctgcgccatcctgccccacctccgcagcttg
gtggagattatcgaacacggtctggtggacgagcagcagaaggtgaggaccatcagcgcc
ctggctatcgccgccctcgctgaagctgccacgccctacggtatcgaatccttcgactcg
gtcctcaagccgctctggaagggcatcaggcagcacagaggaaagggtctcgccgctttc
ctcaaagccatcggttacctgatcccgctgatggacgccgagtacgccaactactacacc
agagaggtgatgctgatcctcatcagagagttccagtcccccgatgaggagatgaagaag
attgtcctcaaggtggtgaagcagtgttgcggcaccgatggtgtggaagccaactacatc
aagaccgagatcctgccccccttcttcaagcacttctggcagcacaggatggccctggac
agacgcaactacagacagttggtggacaccacagtggagctggccaataaagtgggagcg
gcggagatcatttctcgcatcgtcgacgacctgaaggacgaggcggagcagtacagaaag
atggtgatggagaccatcgagaaaatcatgggcaacctgggagcggccgacatcgaccac
aagctggaggagcagctgatcgacggcatcctgtacgccttccaggaacagacgaccgag
gactccgtcatgctcaacggcttcggcacggtggtgaacgccctcgggaagcgcgtgaag
ccctacctgcctcagatctgcggtacggtgctgtggcgtctcaacaacaagtccgccaaa
gtccgtcagcaggccgccgacctgatctcccgtaccgccgtggtgatgaagacttgccag
gaggagaagctgatgggtcacttgggtgtggtgctgtacgagtacctgggagaggagtac
cccgaggtgttgggtagcatcctgggagccctgaaggccatcgtcaacgttattggtatg
cacaagatgaccccgccgatcaaagacctgcttcctcgtttgactcccatcctgaagaac
agacacgagaaggtgcaggagaactgcatcgacctggtgggccggatcgcagacagggga
gccgaatatgtgtcggccagggaatggatgaggatttgttttgagctgctggagctgctg
aaggctcacaaaaaagccatccgcagagccaccgtcaacacgttcgggtacatcgccaaa
gccatcggcccccacgatgtgttggccacgctgctcaacaacctgaaggtccaggagcgt
cagaaccgagtctgcacgaccgtggccatcgccatcgtcgccgagacctgctctccgttc
acggtgctgccggcgctcatgaacgagtaccgcgtgcccgagctcaacgtgcagaacggc
gtgctcaagtccctctccttcctgttcgagtacatcggggagatgggcaaagactacatc
tacgccgtcacgccgctgctggaggacgcgctcatggaccgagacctggtccacagacag
acggccagtgccgtagtccagcacatgtctctgggcgtctacggtttcggctgcgaagac
tccctcaaccacctgctcaactacgtgtggcccaacgtgttcgagacgtcgccgcacgtg
atccaggccgtcatgggcgccctggaggggctgcgggtcgccatcgggccctgccgcatg
ctgcagtactgcttacagggtttgttccatccggccaggaaggtgcgggacgtctactgg
aagatctacaactccatctacatcggctcgcaggacgcgctcatcgctcactacccgcaa
gtctacaacgacgacaagaacatgtacgtccgctacgagctggattacgccttgtaa
DBGET
integrated database retrieval system
