Cyclopterus lumpus (lumpfish): 117750075
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Entry
117750075 CDS
T09199
Symbol
bard1
Name
(RefSeq) BRCA1-associated RING domain protein 1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
117750075 (bard1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clum03019
]
117750075 (bard1)
04121 Ubiquitin system [BR:
clum04121
]
117750075 (bard1)
03036 Chromosome and associated proteins [BR:
clum03036
]
117750075 (bard1)
03400 DNA repair and recombination proteins [BR:
clum03400
]
117750075 (bard1)
Messenger RNA biogenesis [BR:
clum03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
117750075 (bard1)
Ubiquitin system [BR:
clum04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
117750075 (bard1)
Chromosome and associated proteins [BR:
clum03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
117750075 (bard1)
DNA repair and recombination proteins [BR:
clum03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
117750075 (bard1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank
Ank_2
zf-RING_6
Ank_3
Ank_5
Ank_4
BRCT_2
BRCT
Ank_KRIT1
zf-RING_5
zf-C3HC4_3
zf-RING_10
ANK_LRRK2
Motif
Other DBs
NCBI-GeneID:
117750075
NCBI-ProteinID:
XP_034416855
Ensembl:
ENSCLMG00005022393
LinkDB
All DBs
Position
21:13296272..13315203
Genome browser
AA seq
797 aa
AA seq
DB search
MDSEALAQTQDWKNTKEAARKFRQLLLCSKCTNMMTEPVCLGMCEHMLCRSCAGPQAGDG
CVVCQSPAWVKDIHINRQLSSIIQLFCGLEFLLHPIEQPDSKKQTQPRSPVFKQKKNFKI
WFSPRSRKVRCMVEKPSEVLVPESTSSREMAASQQDTCTAQCQDLSVFNFTSSSPDSGSS
CSQKCKNEDRKKGSTKKNVAIRKVSVQRATRTTRKRNKQKTTTCRLDAINQQWGIPKEAD
ALQVKEQHLAEGSRRSSKRVSFHSPAVTSDEPQPKVPQGSTNELSPGRSTMRKNLLEGSV
AVLNEQTQLGQRILDSVGQHDKLSETDSPEKWDSVSVSPPKHSSKRSRVEEKAATLETTP
KRPRASPGRRIKSQMSPAVLNPLSLASPRCDKSINNSRQEQGDSPSVRASVGRQSPCSPV
ASVGRPTSGSPAVTKRNHKGETLLHLAAIKGDVEAVKELLDQGADPNLKDNAGWTPLHEA
CNLGHLVIVEVLVSRGALLNTPGYENDSPLHDAVRNGHPAIVKLLLQFGASGNILNQYGK
RPADYAVGLEMLEIFQEASKGTQYANASLSPSTSLSMVSNCVRRDEMVFLASKLSPPKQV
QVAKLGELLGGRLVDTFSGLVSHVVVPEGHIPTTNSTLLGLLAGCWVVNFSWVEACLHEG
EWVPETEHEAGEGPQRSRINRCSLLPPLFDGCFFFLLGSFKTPSKDELTKLLREGGGQLL
SRQPKPDSDVTQTLSAAAYHALPGSDQALCTQYIIFDPQAPHKPAVTRRGKVWSAPSTWL
VHCISAFRLLPVSGYIQ
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
atggatagcgaagccctcgctcagacacaggactggaagaacacgaaggaggcggcgagg
aaatttcggcaactgctactttgctccaaatgcacgaatatgatgacggaacctgtgtgt
ctaggaatgtgcgagcatatgctgtgcaggtcctgtgctggcccccaggcaggagatggc
tgtgtggtgtgtcagagtcctgcgtgggtgaaggacatccacatcaacaggcagctcagc
agcatcatacagctcttctgtggtttagagttcctgctccatcccatagaacaaccagat
tctaagaaacaaacacaacctcggagccctgtctttaagcaaaagaagaacttcaagatc
tggttcagcccacgcagccgcaaggtacggtgcatggtggagaaaccttcagaggtcctt
gtaccggagagcacgtcttctcgagaaatggctgcatcacagcaagacacctgtactgct
caatgccaggacctgtcagttttcaatttcacctcgtcttcccccgactctggctcatcc
tgttctcaaaaatgcaaaaatgaagacagaaagaaggggtcaactaagaaaaatgttgcc
atcaggaaggtgtcagtgcaacgagccactaggacgacgcgaaaacggaacaagcaaaag
acgacgacgtgcagactggatgctataaaccagcaatgggggattccgaaggaggcagat
gctttacaagtaaaggagcagcacttagctgaagggtcaaggaggtctagtaaaagagtt
tccttccatagccctgctgtcacgtctgacgagcctcagcctaaagtaccgcaggggagt
actaatgaactcagccctggcagaagcactatgaggaagaatctcttagaaggcagcgtc
gctgtcctgaacgagcaaacccagcttggtcagagaatattggacagtgttggccagcat
gacaaactgtctgaaactgacagtcctgaaaaatgggacagtgtgtcggtgtctccccca
aagcattcatcaaaaagatccagagtggaggagaaggctgccacattggagaccacacca
aaaaggcccagggcttccccaggcaggcggataaaatcccagatgtctccagctgtcctt
aaccctctttctttggctagccccaggtgtgataagagcatcaacaactcaagacaagag
caaggagacagcccctctgtgcgagcctctgttggtagacaatctccttgttctccggtt
gcatctgttggacgacccacctcagggagccctgcggttacgaagcggaaccacaaggga
gagaccctgctgcatctggctgctataaagggagatgtagaggctgtcaaggaactgctg
gaccagggggctgaccctaacctgaaggataacgctgggtggactcctctgcacgaagcg
tgtaacctgggtcacctggtgattgtggaggtattggtctccaggggagccctgttgaat
acacctggctatgagaatgactctccgctccacgatgctgtgaggaacggacatccagcc
attgtcaaactgctgctgcagtttggagcctcggggaacatacttaatcagtatggaaag
cggcctgctgactacgcagtgggtctggagatgctggagattttccaagaagcctcaaaa
ggaacccaatatgctaatgcttctcttagcccctcaaccagtctctctatggtgagcaac
tgtgtgaggagggatgaaatggtgtttctggccagcaagctgtcaccaccaaagcaggtt
caagtggccaaactgggagagcttctgggagggagactggttgacaccttttctggatta
gtgagccacgttgtggtgcctgaaggacacatccccaccaccaactccacactccttggt
cttctcgctggctgctgggttgtcaacttcagctgggtggaggcatgtctgcatgaaggc
gagtgggttccagaaactgagcatgaagcgggggaaggcccccagcgcagtcgcatcaac
agatgtagcttgctcccgccgctcttcgatggctgtttcttcttcctccttggctccttt
aagacaccttccaaagacgagctcaccaagctgctccgggaaggaggaggtcaactcctg
agccggcagcccaagcccgatagcgatgtaacacaaaccctgagtgccgctgcctaccac
gcactgcccggctctgaccaggccctctgcacccagtacatcatctttgacccccaggcc
cctcacaagccggccgtaacgaggagaggtaaggtgtggtcagctccctccacctggctc
gtccactgcatctcagccttccggctcctccccgtctcgggctatattcaataa
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