KEGG   Cyclopterus lumpus (lumpfish): 117750123
Entry
117750123         CDS       T09199                                 
Symbol
parp4
Name
(RefSeq) protein mono-ADP-ribosyltransferase PARP4 isoform X1
  KO
K10798  protein mono-ADP-ribosyltransferase 3/4 [EC:2.4.2.-]
Organism
clum  Cyclopterus lumpus (lumpfish)
Pathway
clum03410  Base excision repair
clum04210  Apoptosis
Brite
KEGG Orthology (KO) [BR:clum00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    117750123 (parp4)
 09140 Cellular Processes
  09143 Cell growth and death
   04210 Apoptosis
    117750123 (parp4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:clum03400]
    117750123 (parp4)
DNA repair and recombination proteins [BR:clum03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     117750123 (parp4)
SSDB
Motif
Pfam: VIT PARP VIT_2 VWA_3 BRCT_2 VWA VWA_2 BRCT CDC45
Other DBs
NCBI-GeneID: 117750123
NCBI-ProteinID: XP_034416981
LinkDB
Position
21:complement(3093785..3118949)
AA seq 2003 aa
MAVFEHCFVLLELKNLPFKEKKKLKSAVTENGGKVSYVVNKQCSLIVTGDVSDLSSNRLR
GIQKHRTPVVGLDYVYSCVERGLLLPVDDYRLDAASASSPPLPPLPPSSATQVPLARQEF
KEAAAEPPRDPVKPVDAVGLKAKGGEVVGGFRIYTESDSDLPTYPQNFQVAKYSIFEKAN
SATWCVLELQSCRGETGRRYRVAQYWRDDASTKRAAAAARDTLVFLSTSEEAVQVYGAQR
ETLLASGLQLTNTPQQAPPHLGSAPLQQLLLEEKLNTASLSREVGVFVELLWTEALGRLG
NVLRVPIHKLSLSDVSRVEGLLLQAQRKLREADPSEVPCIPDEVYILLPHTTPLQNPSTA
QLISQKLDLCQLIRDVLNVSESTLRSAAPSSLGKYRALRCGIETVPPDAPEFQAVTALLQ
DRRVQVRQVLRVSRGAELQTFRSEVGNVKPLLHSSSPSNFVGVLSRGLLLPRVGVEHYGI
ERTDVGHLGSGIYFSDAVSTSLKYSTPSKTDGSRLLLVCDVALGRCRDVRKRDAALTQAP
EGHHSVHGVRRTPSARSEFEDDEYVVYSTDQVRLKYVVQFSIRGEQLKEFRPAIDTSAEA
PPPSDQGESTQEEDEVESIKNPLADVKAGLMDSSGQQLPLQAVHVKCKLLDLLSQVIVFQ
TYTNRSPEPIEAKYVFPLDDSAAVCGFEAFIDGKHVVGQVKEKEAARKEYKQAVEKGHGA
YLLDQDAPDVFTISVGNLPPGATVLIKVSFVSELIVKDGSVVFSLPGSVAPWQQSAAINQ
TTQVSVQKVCVTDGPREFSLDVSVEMPNKITGLQCVTHKVKIKRTDCKAVVSVLPGEVMG
QDGFELSITLAEVHLPRMWVEEHPDKDSQASMLVFYPDFEVDSGPASDEVVLLVDSSESM
RGEPLRAARRIARRVLGTLDQHLRLNVVFFGTNHTEAFLAARPLAEARPAAESFIKLSSP
VGGSTELWRPLRALSLLPPSRGVRNLLLLSDGHLQNAELALRLLRDDAGHSRLFTCGLSP
TANRHMLRALAQAGGGAFEYFDTKTKHNWADKVARQLKRMASPGCSSVSVKWQQFNPAAP
PPVQAPKLLHALFNDCHTLVYGFVPHCTQATLLGNLSGQEIKTMVSTSELQKTKGTFLHK
LTARALIRDYEDGSLDSDEAEHEGKKAELKRFIVQLSTEFSILSQFTSFVAIEERDSGRV
EVGFTDIPELISQEDVDFLPYIGWSSPRDAEGVEEPMDMDVDLDYWMGDEEEECGAAMSH
EFDEVDDDDDNEDEERAEGDEDEEDEECAVVRSHEVDEEDEDDEDEECAEDDDDDDDDDD
DDDEWAEVTSQDESEGCAEEDKQPVFPHYEHMSCFLEMDTLPHVVAPPPPPPPPPFPVLP
GQPQPSGLSFHPPSPPFLPLKQNLLSISGQTPVNQRGPAGAAALHDFMGGVGEPKGSPFG
SQQQQQQQQQHQLKQQPQQRAFPLRAGGSGVSREGSLLRRSRGASRRSGRPAEGPSARFT
MEEPLSLRRPPVHVEAEPPVHVEAEPSTKNQTKPMMLEDTFCFRSSNLHQASRGSPASPA
GAAALHDFIGGVGEPVLKEKYKKKRGVAFMSLLGAPAECETLSSAEPPSGIWPPGPKGSP
FGSQQQQQQIKQQQLKQQPQQLSGYYSGAAYKPAFPLRAGGSGVSGMELAPQEPQQQQQL
KLQPQQPQQQSGYYSGMDPMPVGRGEASKPALQIQSGLSSGFGFSFGGSGMELAQQEPQQ
LKLQPQQPQQQSGYYSGAAYKRSFPLRAGGSGVSGMEDCSLPRMSRNASVHVEAEPPVHV
EAEPSTKNQTKPMMLEDTFCFRPSNAHQISRVRKAAPEALQVRWTNIFQMQHSEGYWELT
TELGELVDFNVDLFANDFLKNKGIRSLGVRAHTDILRLVATLLVLQLMRVQSLKEGKLLR
TLFSLEDSSLPRPAQWEEVKRAVDWVCWADRQYPCVYSRLEFGLSWETSTRQLLGFQGFQ
GLPPSSALTSLKLQRADRRVLGF
NT seq 6012 nt   +upstreamnt  +downstreamnt
atggctgtgttcgagcactgctttgtgctcttggagctgaagaatttgcccttcaaggag
aagaagaagctgaaatcggccgtaacggagaacggaggcaaagtctcctacgtggtcaac
aaacagtgctctctgatcgtgaccggcgacgtgtccgacctgagctccaaccggctgcgc
ggcatccagaagcaccgcacgccggtggtcgggctggactacgtgtacagctgtgtggag
agaggcctcctcctgcccgtggacgactacaggctggacgccgcctcggcctcctcgcct
cctcttcctcctcttcctccctcctcggcgacacaagtgccgctcgcgcgtcaagagttc
aaagaagcggccgccgagccgcccagagacccggtgaagcccgtggacgccgtcggcctg
aaggcgaagggcggagaggtcgtgggggggttcagaatttacactgaatccgattccgat
ctcccgacgtacccgcagaacttccaggtggcgaagtattcgatcttcgaaaaggcgaac
agcgccacctggtgtgtgctggagctgcagagctgcagaggggagacgggacggaggtac
cgcgtggcccagtactggagggacgacgcatccaccaagagggcggcggcggcggcgagg
gacacgctggtgttcctgtccacctcggaggaagctgtgcaggtctacggggcccagaga
gagaccctgctggccagcggtctgcagctgaccaacacccctcagcaggcccccccccac
ctgggctctgcccccctccagcagctgctgctggaggagaagctgaacacggcgagccta
tcgcgggaagtgggcgtgttcgtggagctgctgtggaccgaggccctgggtcgcctaggc
aacgtcctccgagtgccgatccacaagctcagcctcagcgatgtgagcagggtggagggc
ctgttgcttcaggcccagaggaagctgagggaggcggacccctccgaggtcccgtgtatc
cccgacgaggtctacatcctgctgccgcacacgacgcccctccagaacccgtccaccgcc
cagctcatctcacagaagctggacctctgtcagttgatccgagacgtcctgaacgtgagc
gagtcgaccctgaggagcgccgcgccgtcgtccctggggaagtaccgcgctctgcggtgc
ggcatcgagaccgttccccccgacgcccccgagttccaggcggtgaccgccctgctgcag
gaccggagggtgcaggtccgacaggttctgcgcgtcagcagaggggcggagcttcagacg
ttcaggagcgaggtcgggaacgttaagcccctcctacattcctccagccccagcaacttt
gtgggagtcctgtctcgtggtctgctgctgccccgtgttggagtggagcattatgggata
gagaggacagacgttggtcatctgggctctgggatctacttcagcgacgccgttagcacc
agtctgaaatactccacgcccagcaagacggacggctctcggctgctgttggtgtgcgac
gtggcgttggggcgctgcagggacgtgcgcaagagagacgccgcgctcacccaggcgccc
gaggggcaccacagtgtgcacggggtccgccgcacccccagcgctcgctctgagttcgag
gatgacgagtacgtggtgtacagtaccgaccaggtgagactgaagtatgtggttcagttc
agcatcagaggggaacagctgaaggagttcaggccggccatcgacacctcagcggaggct
ccgcccccttctgaccaaggtgagtcaacgcaggaggaagacgaggttgaaagcattaaa
aacccgctggcggacgtgaaggccggcctgatggacagctcggggcaacagctccccctg
caggccgtgcacgtgaagtgcaagctgctggacctgctttctcaggtcatcgtcttccaa
acgtacaccaaccggagccccgagcccatcgaggccaagtacgtcttcccgttggacgat
tctgcagcggtttgcgggtttgaagcgttcatcgatgggaaacatgtggtgggacaggtg
aaggagaaggaggcggctcgcaaggagtacaagcaggctgtggagaagggccacggcgcc
tacctgctggaccaggacgcccccgacgtgttcaccatcagcgtgggcaacctgccgccc
ggcgccaccgtcctcatcaaggtgagcttcgtgtccgagctgatcgtcaaggacgggagc
gtcgtcttctcgctgcccggcagcgtggcgccgtggcaacagagcgccgccatcaaccag
accacgcaggtctccgtgcagaaggtgtgtgtgacggacgggccgagagagttcagcctg
gacgtgtcggtggagatgcccaataagatcaccggcctgcagtgcgtcacccacaaggtc
aagattaagaggacggactgtaaggcggtggtgagtgtgctgccaggagaggtcatgggt
caagacgggttcgagctgtcaatcactctggctgaggtccacctgcccaggatgtgggtg
gaggaacaccccgacaaggacagccaggccagcatgttggtgttctacccagactttgaa
gtggactccggtccggcctccgatgaggtggtcctgctggtggactcgtccgagtccatg
aggggcgagccgctccgcgctgcccggaggatcgcccggcgggtcctcgggaccctcgac
cagcacctgcggctcaacgtcgtcttcttcggcacgaatcacacggaggcgttcttggcg
gcgcggccgctcgccgaagctcggccggcggccgagagcttcatcaagctctcctctcca
gtagggggcagcactgagctgtggcgccccctgcgggccctcagcctgctgcctccgtcc
cgcggcgtcaggaacctgctgctgctgtcggacggccacctgcagaacgcagagctcgcc
ctgcggctgctgcgagacgacgctgggcacagccgcctcttcacctgcggcctcagcccg
acagccaatcggcacatgctgagagccttggcccaggcagggggcggagcctttgaatac
ttcgacacaaaaaccaaacacaactgggcagacaaggtggcgcgccagctgaagcgcatg
gcgtctcccggctgcagctcggtgtcggtgaagtggcagcagttcaacccagcggcgccc
cctcctgttcaagcccccaagctgctgcacgctctgttcaacgactgccacactctggtt
tacggcttcgtgccgcactgcacccaggccaccctgctcggaaatctgagcggtcaggag
atcaaaaccatggtgtcgaccagtgagctgcagaagaccaagggcacgtttcttcacaag
ctcacggcgagggccctcatcagggactacgaagacgggagcctggacagcgacgaagcc
gaacacgaggggaagaaggcggagctgaagcgcttcatcgtgcagctgagcaccgagttc
tccatcctgtcgcagttcaccagcttcgtggccatcgaggaacgggactcggggcgagtc
gaggtgggcttcacggacatccccgagttgatctcgcaggaagacgtggacttcctcccc
tacatcggctggagttctcctcgggatgctgagggggtggaggaacctatggatatggat
gtggacctggactattggatgggagatgaggaggaagaatgtggtgcggcaatgtcacac
gagtttgatgaggttgatgatgatgatgataatgaggatgaagaacgtgctgagggagat
gaggatgaggaggatgaagaatgtgctgtggtaaggtcacacgaggttgatgaggaggat
gaggatgatgaggatgaagaatgtgctgaggatgatgatgatgatgatgatgatgatgat
gatgatgatgaatgggctgaggtaacgtcacaagatgagagtgaaggatgtgctgaggag
gacaaacaacccgtctttccacattatgaacacatgagttgttttctggaaatggacacg
cttccccatgtggttgctccgcctcctcctcctcctcctcctccattcccagtgttacca
gggcaaccccaaccttcaggcctctccttccatcctccttctcctccttttttgccactc
aaacagaaccttctttcaatctcaggacagacgcctgtcaatcaaagaggtccagcagga
gctgccgctctccacgacttcatgggaggagtcggagaacccaaaggctcccctttcggc
tctcaacaacaacaacaacaacaacaacaacaccaactaaaacaacaaccacaacaacga
gcctttccgctccgagccggcggttccggtgtctcccgagaaggttccctcctcagaagg
tctcgaggtgcttcaagacggagcggtcgacccgccgaaggtccgtctgcccgcttcacg
atggaggaacctttgtctctgcgccgccctccagtgcacgtggaggcggagcctccagtg
cacgtggaggcggagccttccacaaaaaaccaaaccaagccgatgatgctcgaggatacg
ttttgctttcggtcctcaaatcttcatcaagcttctcgcggtagtccggccagtccagca
ggagctgccgctctccacgacttcattggaggagtcggagaaccggtcctgaaagaaaag
tacaagaaaaaaagaggagtggctttcatgagccttttgggagcgccggccgaatgtgag
accttgtcctcggcagaaccgccatcggggatttggcccccgggacccaaaggctcccct
ttcggctctcaacaacaacaacaacaaataaaacaacaacaactaaaacaacaaccacaa
caactgtctggttattattctggagcagcgtacaaaccagcttttccgctccgagccggt
ggttccggtgtctctgggatggaactagcaccacaagaaccacaacaacaacaacaacta
aaactacaaccacaacaaccacaacaacagtctggttattattctgggatggatccgatg
ccggttggacgtggagaagcatccaaaccagctcttcagatccaatctggcctgagttca
ggttttggttttagtttcggtggctctgggatggaactagcacaacaagaaccacaacaa
ctaaaactacaaccacaacaaccacaacaacagtctggttattattctggagcagcgtac
aaacgatcttttccgctccgagccggcggttccggtgtctctgggatggaggactgttcc
ctccccagaatgtctcgaaatgcttcagtgcacgtggaggcggagcctccagtgcatgtg
gaggcggagccttccacaaaaaaccaaaccaagccgatgatgctcgaggatacgttttgt
tttcggccctcaaatgctcatcaaatttctcgtgtcaggaaagcggctcctgaagcgctg
caggtcagatggacaaacatcttccagatgcaacattcggagggctactgggagttgacc
accgagctcggtgaactcgtggacttcaacgtggacctcttcgccaacgacttcctgaag
aacaagggcatccggtctctaggtgtgagagcccacacagacatcctgaggctggtggcc
acccttctggtcctgcagctgatgagggtccagtctctgaaggagggcaaactgctgcgc
accctcttcagcctggaggactcgtctcttcccaggcccgcgcagtgggaggaggtgaag
cgggcggtggactgggtctgctgggcggaccgccagtacccgtgcgtctacagccggctg
gagttcggtctgagctgggagacctccacccgccagctgctgggcttccagggcttccag
ggcctcccgccctcctcggccctcacgagtctgaagctccagagggccgatcggcgtgtg
ctgggcttctaa

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