KEGG   Cyclopterus lumpus (lumpfish): 117750149
Entry
117750149         CDS       T09199                                 
Symbol
rab5b
Name
(RefSeq) ras-related protein Rab-5B
  KO
K07888  Ras-related protein Rab-5B
Organism
clum  Cyclopterus lumpus (lumpfish)
Pathway
clum04137  Mitophagy - animal
clum04144  Endocytosis
clum04145  Phagosome
clum04148  Efferocytosis
clum05132  Salmonella infection
Brite
KEGG Orthology (KO) [BR:clum00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    117750149 (rab5b)
   04145 Phagosome
    117750149 (rab5b)
   04137 Mitophagy - animal
    117750149 (rab5b)
   04148 Efferocytosis
    117750149 (rab5b)
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    117750149 (rab5b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:clum04131]
    117750149 (rab5b)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:clum04147]
    117750149 (rab5b)
   04031 GTP-binding proteins [BR:clum04031]
    117750149 (rab5b)
Membrane trafficking [BR:clum04131]
 Endocytosis
  Rab GTPases and associated proteins
   Rab GTPases
    117750149 (rab5b)
 Endosome - Lysosome transport
    117750149 (rab5b)
Exosome [BR:clum04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   117750149 (rab5b)
  Exosomal proteins of other body fluids (saliva and urine)
   117750149 (rab5b)
  Exosomal proteins of colorectal cancer cells
   117750149 (rab5b)
  Exosomal proteins of melanoma cells
   117750149 (rab5b)
GTP-binding proteins [BR:clum04031]
 Small (monomeric) G-proteins
  Rab Family
   Rab5/17/22/31 [OT]
    117750149 (rab5b)
SSDB
Motif
Pfam: Ras Roc Arf GTP_EFTU Gtr1_RagA MMR_HSR1 RsgA_GTPase SDR-like AAA_16 B12-binding
Other DBs
NCBI-GeneID: 117750149
NCBI-ProteinID: XP_034417050
Ensembl: ENSCLMG00005017699
UniProt: A0A8C3A5V4
LinkDB
Position
21:complement(18600268..18604594)
AA seq 216 aa
MSSRGSGGRSNGTLPQTKICQFKLVLLGDMAVGKSSLVLRFVKGQFDEFQETTIGAAFLA
QSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVFDITKPETFERAKAWVKELQ
RQASPNIVIALAGNKADLAERRLVEYEDAQTYAEDTGLLFMETSAKTAMNVNELFLAIAK
KMPKTDTQNPTHAARHRGVNLQDPDAHSTRACCGGN
NT seq 651 nt   +upstreamnt  +downstreamnt
atgagctccagagggagtggaggccgctccaacggcacactaccacagaccaagatctgc
cagttcaagttggtgctgctgggcgacatggccgtgggcaagtccagcctggtgctgcgc
ttcgtcaaaggccagttcgacgagttccaggagacgactatcggagctgcgttcctggct
cagtcggtgtgtctcgatgacaccacagtaaagtttgagatctgggacaccgcaggacag
gagcgataccacagcctggctcccatgtactaccgcggcgctcaggccgccattgtcgtc
tttgacatcaccaagccggagacctttgagagagccaaggcctgggtgaaggagctgcag
aggcaggccagtccgaacattgttattgctctggccgggaacaaggccgacctggcggag
aggagacttgtggagtatgaggacgcccagacgtatgctgaagacaccggcttgctcttc
atggagacctctgctaagacggccatgaacgtcaacgagctcttcctggccatcgcaaaa
aagatgccaaaaacagacacccagaaccctacacatgcagcgcgacaccggggggtcaac
ctccaggacccagacgcccactccacccgagcctgctgtggtgggaactag

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