Cyclopterus lumpus (lumpfish): 117750337
Help
Entry
117750337 CDS
T09199
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(XVIII) chain-like
KO
K06823
collagen type XVIII alpha
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
clum04147
]
117750337
00535 Proteoglycans [BR:
clum00535
]
117750337
00536 Glycosaminoglycan binding proteins [BR:
clum00536
]
117750337
Exosome [BR:
clum04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
117750337
Proteoglycans [BR:
clum00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
117750337
Glycosaminoglycan binding proteins [BR:
clum00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117750337
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF1554
DUF959
Motif
Other DBs
NCBI-GeneID:
117750337
NCBI-ProteinID:
XP_034417390
LinkDB
All DBs
Position
21:complement(18958552..18993254)
Genome browser
AA seq
1452 aa
AA seq
DB search
MRTHVEVLFLLTLWVVSSDAWFWDWTGTTTFPPTVDHEGSGSPAGSGEPPSDNIASVGAE
IIDEVHGIQTIVQTWDESTEGHRLTPIIPTTQPENDSESEKGTAGISSRIRKPEDTGVSL
QQLIGDPPPNTITRVYGPDYRPSYVFGPDSNTGQLARAHLPSPFYRDFALTFNLKPTSER
GGVIFSVTDAAQKIMYVGVKLSAVQAGNQNVILYYTEPDSQTSYEAARFLVPSMMDTWTR
FSLAVRDDTVKFYLNCDTNPQVMRLERSPDEMELQTGAGVFVGQAGGADPDKFLGVIGEL
RVVGDPRAAQRHCEDDDDDSDMASGEGSGHEETRPPQATGEKHRMTTPPPSSRPLQPPPL
SSKDDVSIAGETASDSQYXVSSGASFPGRESPAGGRGEKGERGDAGLKGDRGPIGPKGDA
GSGSGSRGPARGEKGEPGELGLKGSAGFGYQGKKGDPGPPGQPGSPGPPGPATEYSVNSD
GSVSSRGPGPRGPAGPQGATGPQGPPGADGEPGDPGEDGKTGPDGPPGFPGTPGDSGPTG
AKGDRGEGQPGPRGLPGPPGLPGTGSTFVDMEGSGFPDLDSIRGSPGLPGPPGPPGPAGP
ASPSTAGAASSSGAFGPPGKDGAPGQPGLPGLPGTDGRPGALGTNGEKGVSGDLGLPGAV
GEKGSQGDIGLPGTTGQTGLAGLPGPIGPVGQPGPAGPPGPSYRVGFDDMEASGGGFSNG
LPGITGPEGRQGSSGLPGLPGKAGLPGMPGQKGSEGLTGRDGRPGLDGFPGPQGPKGDSG
NKGERGENGRDGTGLQGPPGPPGPAGQIISQTSGNVNGAVGNDGPQGGPGLPGQAGFPGP
IGPKGDRGDPGLPGYGGKGEKGEPGLVIGPDGNLLHLEGLTGSKGERGTPGPVGPSGQYG
PSGIKGEIGMPGRPGRPGINGYKGEKGETGVGYGYPGVPGQPGPPGPPGPTMPLDRFNRY
DETSRNYPATKGEKGEGGDRGIPGIPGTASNFDIYTFKNELKGERGDLGVKGEKGEPSGG
YYDPRFGGVQGPSGPPGKPGLEGPKGEPVVGPPGPQGPPGTPGIGYDGRPGPPGLPGPPG
PQGSPSLPGAYRPNHSLNVPGPPGPPGTPGSPGHSSGVTVLRSYDTMVATARRQTEGSLI
YIVDKADLYLRVRDGLRQVMLGDYSPFFRDLENEVAEVQPPPVILYPQSQDQSHNNGAGH
YSQGGSAIRPIEPPPHPPVDPRYPPQYDPRFPDPRRTGQTDGRLATQQTENRYPVTPQRR
PSPPVAQPVSHVEPSESGLHIIALNAPQTGNMRGIRGADFLCFQQARAVGLKGTFRAFLS
SKLQDLYTIVRRSDRDSTPIVNLKHQVLFSSWESLFGDLSKMRENVPIYSFDGRDIVRDS
AWPEKMVWHGSSNKGHRQTDHYCETWRAGDHAVTGLASSLQSGHLLQQTSSSCSGSYIVL
CIENAFTSHSKK
NT seq
4359 nt
NT seq
+upstream
nt +downstream
nt
atgaggacccatgttgaagttttgtttttgttgaccctgtgggtggtctcctctgatgcc
tggttctgggactggactggcactacaacttttcccccaacagtggaccatgaggggtct
ggcagcccagcaggtagtggagaaccaccatcagacaatattgcaagtgttggagcggag
atcattgacgaggtacatgggatccaaaccattgtgcagacttgggatgagagcactgag
ggacatcgactgacccctataatacctacaacacaaccggagaatgacagtgaatcagaa
aagggaacagcagggatttcatcacgaatacgcaaacctgaagacactggagtctccctg
caacagctgattggggatcctcctccaaatacgatcacccgggtctatgggcccgactac
aggccaagctatgtctttggccctgactccaacacgggccagctggcccgcgcccacctg
ccgagccctttctaccgagacttcgccctcaccttcaacttgaaacccacctctgaacgc
ggcggcgtcatcttctccgtcacagatgccgcacagaagatcatgtatgtgggcgttaaa
ctgtcagccgtgcaggccggcaaccagaatgtcatcctgtactacacggagcccgactcg
cagacgtcgtacgaggcggccaggttcctcgtgccctccatgatggacacctggactcgt
ttctccctcgctgtcagggatgacacggtgaagttctacctcaactgtgacacaaaccct
caggtgatgcgccttgagaggtccccggacgagatggagctgcagaccggcgccggggtc
tttgtcgggcaagctggaggagcggatcctgacaaatttctgggggtgatcggtgagctg
agggtggtgggagacccccgtgctgctcagaggcactgtgaagacgatgacgacgactca
gatatggcttcaggggaaggaagcggccatgaagaaaccagacccccacaagcaaccggg
gagaagcatagaatgacgactccgcctccatcttcccggccccttcagccgccaccgctg
agcagcaaagacgacgtctcaattgccggagaaaccgccagtgactcccagtacngagtc
agttcgggcgcgagctttccaggtcgagagagtccagctgggggcagaggagagaagggt
gagcggggggatgcaggactgaaaggagacaggggtccaatcgggccaaagggagatgct
ggctccggctccggctcacggggtccagcccgtggagagaagggggaaccaggagaatta
ggattaaagggcagtgcaggctttggctaccaaggaaagaaaggagaccccggcccacct
gggcaacccggttcccccggccctccaggacccgcaaccgagtactcggtcaacagtgac
ggctcagtttcttccagaggccccggaccccgaggaccggccggaccgcaaggtgctacg
ggcccccagggaccaccaggagctgatggagagccaggggatcctggtgaggatggaaaa
accggacctgatggaccacctggcttcccaggaaccccaggtgactctggaccaacagga
gcaaagggagaccgtggagagggtcaacctggccccaggggactccctggacctccggga
ctcccaggaaccggatctacctttgtggacatggaaggctctgggttccctgatctggac
tccattcggggatcgcctggcctaccaggtccccctggtccccccggtcccgccggtcct
gcgagtccctcgacagcaggagcagcatcgagttctggggcattcggaccaccaggaaag
gacggggcgcccggtcaacctggcttgcctggtttgccgggtactgatggacgcccagga
gctcttggtaccaatggagaaaagggggtttcaggagatctgggtcttccaggagcagtc
ggagagaagggatctcaaggagatattggtttaccgggaaccacaggacagactggactg
gctggtctgcccgggcctatcggaccagttgggcaaccagggcctgcggggcctcctgga
ccaagctaccgtgttggatttgatgacatggaggcctctggtggagggttcagcaatgga
ctgcctggcatcacaggaccagagggaagacagggttcttctggcttgcctggacttccg
ggcaaagctgggttgcctggtatgccaggtcaaaagggcagtgaaggtctcacaggaaga
gatggacgtccagggttggacggcttccctggacctcagggaccaaagggtgacagtggc
aacaaaggagaaaggggtgaaaacggtcgagatggaacaggtctccaagggccacccgga
ccacctggaccagcaggacaaatcatctcccagacatctggcaatgttaatggtgctgtt
ggcaatgatggtccccagggaggacctggtttacctggccaagctggattccctggtcct
attggaccaaagggtgacagaggggaccccggccttccaggctacgggggcaagggtgag
aaaggtgaaccaggcctggtaatcggacctgatggaaaccttctgcatctggaagggctg
acgggttcgaagggagagagaggaacacctggacctgttggaccctctggccagtatggg
ccttctggaataaagggtgaaatcggaatgcctggaagacctggtcgccctggtataaat
ggttacaagggtgagaaaggagagacaggagtcggctatggctacccaggagtccctggc
caaccaggaccacctggacctcctgggccaaccatgcccttagatcgcttcaatcgctat
gatgaaacttcaaggaattacccagcaactaaaggggaaaaaggagagggtggggaccga
ggaattccaggaatcccaggaaccgcctctaatttcgatatttacacattcaagaatgaa
ctgaagggagagcgcggagacctaggtgtgaagggagaaaagggagagcctagtggcgga
tattatgacccacgttttggaggagtacaaggcccgtcagggccccctggcaaaccaggc
ttagagggtccaaagggagaacctgtagtgggccctcctggaccccagggaccaccagga
acaccagggattggttatgatgggcgtccgggtcctccaggattacctggacctccagga
ccccaaggatctccttcacttcccggagcatataggcccaatcactccctcaatgttcct
ggacctcctggtcctcctggtactcctggaagtcccggtcactcttctggggttactgtt
ttaaggtcatatgacacgatggtagctactgcgagacgccagacagagggcagcctcatc
tacatcgttgacaaagcagacctctacttgagagtacgcgacggactgcggcaagtcatg
cttggagactacagtcccttcttcagagatctggagaacgaggtggcagaggttcagcct
ccacctgtgatcctgtacccccagtcccaggaccagtcccacaacaacggagccggccat
tactcccaggggggttctgccatacgacccattgagcctccaccacacccacccgttgac
cccagataccccccacagtatgatcccagattcccagacccgagacgcacgggccagacg
gatgggcgattagccacacaacagactgagaacagataccctgtaactccacagcgacga
cccagcccacctgtagcgcagcctgtcagccatgtggagccctcagaatcaggactccat
atcatcgccttgaacgcccctcaaaccggtaacatgcgggggatccgcggggcagacttc
ctgtgcttccagcaggcccgcgctgtgggcctgaaggggaccttcagagcgttcctgtcc
tccaagcttcaggacctctacaccatcgtccgcaggtcggaccgagacagcacacccatc
gtgaacctcaagcaccaagtgttgttcagcagttgggagtctctctttggtgatctgagc
aaaatgagggagaacgtaccgatctactccttcgatggcagagacatcgtcagggacagc
gcatggccagagaaaatggtctggcacggatcgagcaacaaaggccaccggcaaacagac
cactactgcgaaacatggcgggcgggcgaccacgctgtgactggtctggcatcatcacta
cagagcggccacctcctgcagcaaacctccagcagctgctccggctcctacatcgtcctg
tgcatcgagaacgccttcacatcacactccaaaaaataa
DBGET
integrated database retrieval system
