Cyclopterus lumpus (lumpfish): 117750419
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Entry
117750419 CDS
T09199
Symbol
pms1
Name
(RefSeq) PMS1 protein homolog 1 isoform X1
KO
K10864
DNA mismatch repair protein PMS1
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
clum03400
]
117750419 (pms1)
DNA repair and recombination proteins [BR:
clum03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
117750419 (pms1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_mis_repair
HATPase_c_3
HMG_box
HMG_box_2
HATPase_c
Motif
Other DBs
NCBI-GeneID:
117750419
NCBI-ProteinID:
XP_034417528
Ensembl:
ENSCLMG00005014136
LinkDB
All DBs
Position
21:6875849..6891255
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AA seq
884 aa
AA seq
DB search
MKQLPPDTVRLLSSSQVITSLVNVVKELMENSLDAEASSIDVKLENYGLDRIEVRDNGLG
IKADDTPVMAVTHFTSKICSNEDLERLETYGFRGEALGSVCSVAEVSVITKTEEDDVSTQ
YTLNFSGEIVSQKPSHLGQGTTVSVLKLFKNIPVRRQYYSSTKKCKEELKKIQDLLVAYA
IIKPGLRLTLIHNRVVVWQKATVADHRSALLATLGAGAVANLLPCHHHQEQPEILLEGFF
PKPGADYSSTSSSSADKTFIFVNNRPVHQKDIMKLLRQHYSAQYPDTPTRNRYPTAMLKI
TVPPSSVDVNLTPDKTQVLLHDKEAVLTALDALLVSLYGYRHNGDPPAEKQLGRETSPSP
PTARRADASRPDGEQSGERVGRTSNGSSSSSVAEDWIVDQFPAGLETDVSVCDDEMARSC
TRAAGMGSAERLGGDAAASGDNSSKISAEDWSRGTALTDPVSGEPLQPVQIHQPSKDVRS
DCDEIKSRSGSDKKVFNAITEKRAALTAYDLISNRAMRVPLSPAALFEKEARVEVLREKP
TASLQDISDTVHERWKNLRVEERRKYEEKARRHLEHHDQRTKSASAEGPGETSASTPRGH
AQGQKRKAPLSNQQLLDELFSAQPQKKTRNPAPKPSRLLPCSVAALRLRLRRLSSQSAGV
PRGPRLVNRLASRSAWVILCGQRLMLLNPFRVEEALLFKRLLENNILPAVSLQNPIQLTD
GSLGGAGYTEALCNMEKRSPELDGGALFSDPRLVANGFKIKLTPGLTSAERHLEVTAMAD
CVPFLGVEDLREILTAVLHRKARTVQECRPLKVTNYLQGEAVRLARQLPTNPSREDVEET
LLRMDQQLAESNQTCIHGRPFLQHLSDVPSTDQEAKALLRPLEL
NT seq
2655 nt
NT seq
+upstream
nt +downstream
nt
atgaagcagctgcctccagatacggtccggctgttgtccagctcccaggtcatcacctct
ctggtgaacgtcgtgaaagaactgatggaaaattccctggatgccgaggcttcgagcatc
gacgttaaactggagaactacggtttggaccggatagaagtgcgtgataacggcctcgga
atcaaagccgacgacactcccgtgatggccgtgacgcacttcacttcaaagatctgtagc
aacgaggacctggagcgactggagacgtacggcttcagaggggaggcgctgggctccgtc
tgttccgtggccgaggtgtctgtcatcacgaagacggaggaggatgacgtcagcacccag
tacacgcttaacttcagtggggagatcgtctcccagaagccgtctcacttgggtcaaggc
acaacagtgagcgtactgaagctgttcaagaacattccagtgagacgtcaatactactcc
tccaccaagaagtgcaaggaggaactgaagaaaatacaggacctgctggtggcctacgcc
attataaaaccgggcttgaggctcacactaattcacaatagggtggtggtctggcagaag
gccacggtggccgatcacagaagtgccctcctcgctacgctgggagccggcgccgtcgcc
aacctgctgccttgccaccatcaccaagagcaaccggagattcttttagaaggctttttt
ccgaagcccggagcggattactcttctacgagctcttccagcgccgacaagacattcata
ttcgtcaacaaccggcccgtccaccaaaaagacataatgaagttgctacgtcaacactac
agcgctcagtatccggacaccccgacccggaaccgctatcccaccgccatgcttaagatc
acggttccaccatcctcagtcgacgtcaacctgacacctgacaagacccaggttcttctt
cacgacaaggaggctgtgctgaccgcattagatgcgttactggtttctctctacggctat
cggcacaacggtgaccccccggccgagaagcagctcggccgcgagacgtccccctcgccc
ccgactgcccgccgagccgacgcctcacgaccagacggcgaacaaagcggcgagcgggtc
ggccggacctcaaacggcagctcttcgtcctccgtagcggaggactggattgtcgaccag
ttcccagctgggcttgagaccgacgtctctgtctgtgatgatgagatggctcggagctgc
actcgggcagcaggaatgggttcagcagagagactcgggggcgacgccgccgcgtcgggg
gacaactcgagcaagatatcggctgaagactggagccgggggacggctctgaccgacccc
gtatcgggagaacccctgcagcccgtccagatccaccagccctcgaaggacgtccgctcc
gactgtgatgagatcaagagtcggagcggctccgacaaaaaggtgttcaacgccataacg
gagaagcgggccgctctgacggcctacgacctgatcagcaatcgcgccatgagggtgccg
ctgtcgcccgccgccctgttcgagaaggaggcccgagtggaggtcctcagggagaaaccg
acagccagcctgcaggatatcagcgacaccgtgcacgagaggtggaaaaatctgagggtg
gaagaacgtaggaagtatgaggagaaggcgagaagacacctggagcaccacgaccagagg
accaagtcggcctcggccgaaggccccggagagacgagcgcgagcaccccgaggggccac
gcgcagggccagaaacgcaaggccccgctgtccaaccagcagctgctggacgagctcttc
tccgcgcagccccaaaagaagacgaggaaccccgcgccgaagccctcgcggctcctcccc
tgcagcgtcgctgccctccggctgcggctgcggcgcctttcatcccagagcgccggggtg
ccgcggggcccacgtcttgtaaaccggctggcctctcggagcgcctgggtcattttatgc
ggtcagaggctcatgttgttaaacccgtttcgagtggaggaggccttgctgtttaagaga
ctcctggagaacaatatacttccagcagtgagtctccagaaccccatacagttaacagat
ggaagtctggggggggctggatacactgaggctttgtgcaacatggagaagcgaagcccc
gagctggacgggggggccctcttctccgatccccggctcgtggctaacggctttaaaatc
aaactcactccaggcctcacgtcagccgagagacatctggaagtcacggcgatggcagac
tgcgtgcctttcctcggtgtggaggacctcagggagatcctgacagcagttcttcacagg
aaggcccggaccgtgcaggagtgccggccacttaaagtcacaaactacctgcaaggggaa
gcagtacgacttgcccgtcagttacctacaaatccatccagggaagatgtggaggaaacc
cttctacggatggatcagcagctcgctgagagcaaccaaacctgcatccacggacgacct
tttctccaacacctgtctgacgtcccttctacggaccaggaagctaaagctctgctgagg
ccgttagagctgtga
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