Cyclopterus lumpus (lumpfish): 117750499
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Entry
117750499 CDS
T09199
Symbol
dhx38
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 isoform X1
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117750499 (dhx38)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
clum03041
]
117750499 (dhx38)
Enzymes [BR:
clum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117750499 (dhx38)
Spliceosome [BR:
clum03041
]
Complex C
Other components
Step II factors
117750499 (dhx38)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
T2SSE
nSTAND3
AAA_16
Microtub_bd
Flavi_DEAD
PhoH
Motif
Other DBs
NCBI-GeneID:
117750499
NCBI-ProteinID:
XP_034417633
Ensembl:
ENSCLMG00005018523
LinkDB
All DBs
Position
3:14424676..14442763
Genome browser
AA seq
1249 aa
AA seq
DB search
MDDDVSMHRLEGTDPDAQVGGLMVKTKSAAAEPHVFRAPTPRTSLLGLDLLAAQKRKERE
SQEQAEADDSNRKKSKVSSYQDWEEGKSDSGSDEEDDDKDKDAKKESRKYRVTGSETPSS
PGGVSEEFRRRHQQREKDRREHGVYASSKEDKNKERERSRDKGKDRRNERDERESSRGSS
SSRSERGERSERSPRDGCSDRISRGTKRDEPLSPQQRPRDSFTPSRSNWEEDDSGYSSSR
HSQWESPSPALPHREMDRSERSHRSGRESERRDRSIRGRYPDDTPLPTPSYKYNEWANDR
KHLGTTPRLSQGKGRKEDGSGGFVFDNEDEKDQWEEDQKQADRDWYMMDEGYDEFHNPFT
TTSEEYVKKREQILQKQTQKRISAHKRQINEDNERWETNRMLTSGVVQRLEVDDDFEEDN
AAKVHLQVHNLVPPFLDGRIVFTKQPEPVIPVKDATSDMAIIARKGSQLVRKHREQKERK
KAQHKHWELAGTKLGDIMGIKKTEAEDSSGGKPVGEDGKVDYRTEQKFADHMREKTEASS
EFAKKKTLLEQRQYLPIFAVRQQLLNIIRDNSIVIVVGETGSGKTTQLTQYLHEDGYTSY
GMVGCTQPRRVAAMSVAKRVSEEIGTNLGEEVGYAIRFEDCTSEKTLIKYMTDGILLRES
LRESDLDHYSAVIMDEAHERSLNTDVLFGLLREVVSRRTDLKLIVTSATMDSDKFAAFFG
NVPIFHIPGRTFPVDILFSKTPQEDYVEAAVKQALQIHLSGLIGDILIFMPGQEDIEVTS
DQIVERLEDLENAPALAVLPIYSQLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGI
MFVVDAGYCKLKVFNPRIGMDALQVYPISQANANQRSGRAGRTGPGQCYRLYTQSAYKNE
MLTTTIPEIQRTNLANVVLLLKSLGVQDLLLFHFMDPPPEDNMLNSMYQLWILGALDNTG
ALTPTGRLMVEFPLDPALSKMLIVSCDMSCSADILIIVSMLSVPAIFYRPKGREEESDQV
REKFAVPESDHLTYLNVYMQWKNNNYSGIWCNDHFIHTKAMRKVREVRSQLKDIMVQQRM
NLISCGSDWDIIRKCICAAYFHQAAKLKGIGEYVNVRTGMPCHLHPTSSLFGMGYTPDYI
IYHELVMTTKEYMQCVTAVDGEWLAELGPMFYSIKHAGKSRQDNRRRAKEELTSMEEEMS
MAEEQLRSRREEQEKKSSTGTVKPPKICTPGRKEEAPMTPRRTPARFGL
NT seq
3750 nt
NT seq
+upstream
nt +downstream
nt
atggatgacgatgtgtccatgcataggctggaagggactgatccagatgctcaggtcggt
ggactgatggtaaagacgaagagtgctgctgcagagccccatgtttttcgagcacccact
ccccgcacctcgctgctgggtttggatctgctggcagcccagaaaaggaaggagcgtgag
agtcaggaacaggcagaggccgatgacagcaatagaaagaagtcaaaggtttcctcctac
caggactgggaggaaggtaaaagtgactctgggtctgatgaagaagacgatgataaggac
aaggatgctaagaaggagagcaggaagtatcgtgtgactggctctgagacaccctcaagc
cctggaggggtcagcgaagagttccgacgccgacaccagcagagagaaaaagacagacgt
gagcatggagtctacgcctcctccaaagaagacaagaacaaagaaagagaaaggagcaga
gataagggaaaagatcgaaggaatgaaagagatgagcgagagagcagccgtggcagcagc
agcagccggtcggagcgcggtgagcggagtgagcgctcgccgagagatggctgctccgat
cgcatcagcagggggacgaagagagacgaacccttgtcgccacagcaacgccccagagat
tctttcacaccctcgcgctccaactgggaggaggatgacagtggttattccagttcacgg
cattcccagtgggaatcgccgtcccctgctctgcctcacagagagatggatcgctcggag
cgaagccatcgctccggccgagagagtgagaggagagacaggtcaatcaggggccgttac
cctgacgacacacccctgcctaccccatcatacaagtacaatgagtgggccaatgacaga
aagcatttgggtactacaccacgtttatcacaaggaaaaggtaggaaagaagatggctcg
ggaggatttgtgtttgataatgaggatgagaaagaccagtgggaggaggaccagaagcaa
gcagacagagattggtacatgatggatgaaggctatgatgagttccacaaccctttcact
accacctctgaagaatatgtaaagaagagagagcagatccttcagaagcagactcaaaaa
aggatatctgcccacaagcgacagatcaatgaggataatgagcggtgggagaccaaccgt
atgctgaccagtggtgtagtgcagaggttggaggtggatgatgactttgaggaggacaat
gctgctaaggttcatctgcaggttcacaacctggttccaccctttctggatggaagaata
gtctttactaagcagccggagcctgtcatccctgtgaaagatgctacctctgacatggcc
attattgctcgcaaaggcagccagcttgtgcgtaaacatcgtgagcagaaagaacgcaag
aaggcacagcacaaacactgggaattggcaggcaccaagttgggagacatcatgggcatc
aagaagactgaagcggaagactcctctggaggcaaaccggtgggagaggacggcaaagta
gactacagaacagagcagaaatttgcagaccacatgagagaaaagacggaggccagcagt
gagtttgctaagaagaagacccttctggaacagagacagtacctgcctatttttgctgtc
agacagcaacttctcaacatcatacgggacaacagcattgtgattgttgttggggaaacg
ggcagtgggaagaccacacagctgactcagtacctgcatgaggatggctacaccagctat
ggcatggtgggttgtactcagccccgaagagtggcagccatgagtgtggccaagagagtc
agcgaggagatcggcactaaccttggagaggaggtgggctacgcaatccgttttgaggac
tgcacatccgagaaaaccttaataaagtacatgacagacggtatcctgctcagggagtca
ttgagggagtcggacctggatcactacagtgctgttatcatggatgaggctcatgaacgc
tccctgaatacggacgtgttgttcggcctgctccgtgaagttgtatctcgacgtactgat
ttgaaactcatagttacctctgcaactatggactcagacaagtttgctgcattttttggc
aacgtacccattttccacattccaggaagaacatttcccgtagacatcttgtttagcaag
actcctcaggaagactatgtggaggcagcagtgaagcaggccctgcagatccacctcagt
ggactgataggcgacatcctcatcttcatgcccgggcaggaggatattgaggtgacgtcg
gatcagatcgtggagcggctggaggacttggagaacgctcctgctctggccgttctgccc
atctactcccagctgccttctgacctccaggccaagatcttccagaaggctccagatggt
gtgaggaaatgcattgtcgccacaaacatcgctgagacctccctcactgtggatggaatc
atgtttgtcgtggatgcaggatactgcaaacttaaggttttcaatcctcgcattggaatg
gatgctctacaggtttatcccatcagccaggctaatgccaaccaacgttctggcagagca
ggacgtacaggacctggacagtgttacaggctctacactcagagtgcctataagaatgag
atgttgactaccaccataccagagatccagaggaccaacctggccaacgtagtcctgctg
ttgaagtctctgggtgttcaggatttgctcctcttccacttcatggatccaccacctgaa
gacaacatgctcaactccatgtaccagctgtggatcttgggagctctggacaacacaggt
gctttgacaccgacggggcgtctgatggtggagtttcccctcgaccccgccctctccaag
atgctgattgtgtcctgcgacatgagctgcagtgctgacatcctgatcatcgtctccatg
ctgtctgtgccagccatcttctacaggcctaagggccgtgaggaggagagtgaccaggtg
agggagaagttcgcagtcccagagagcgaccatctcacctaccttaatgtctacatgcag
tggaagaacaacaattactccggcatctggtgcaacgatcacttcatccacaccaaggcc
atgcgcaaggtgcgtgaggtgcgttcccagttaaaggacatcatggtgcagcagaggatg
aacctgatttcctgcgggtcggactgggacatcatcagaaagtgcatctgtgctgcatac
ttccaccaggctgccaagctcaagggcattggtgaatatgtgaacgtgaggacaggcatg
ccatgtcacctccatcctaccagctccctgtttggtatgggctacacccccgactacatc
atctaccacgagctcgtcatgaccaccaaggagtacatgcagtgtgtgaccgcagtggat
ggagagtggctagcagaacttggaccaatgttttacagcatcaaacatgcaggaaaaagc
agacaggacaaccgtcgccgggccaaggaggagctcaccagcatggaggaggagatgtcc
atggctgaggagcagctgcgatcgcgccgagaagagcaggagaagaagagcagtactggc
actgttaagcctccgaaaatctgcacaccaggaagaaaagaagaggcccccatgacgccc
agacgcacccctgcccgctttggactgtag
DBGET
integrated database retrieval system
