KEGG   Cyclopterus lumpus (lumpfish): 117750562
Entry
117750562         CDS       T09199                                 
Symbol
col4a1
Name
(RefSeq) collagen alpha-1(IV) chain
  KO
K06237  collagen type IV alpha
Organism
clum  Cyclopterus lumpus (lumpfish)
Pathway
clum04382  Cornified envelope formation
clum04510  Focal adhesion
clum04512  ECM-receptor interaction
clum04518  Integrin signaling
clum04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:clum00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    117750562 (col4a1)
   04518 Integrin signaling
    117750562 (col4a1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    117750562 (col4a1)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    117750562 (col4a1)
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    117750562 (col4a1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:clum04147]
    117750562 (col4a1)
   00536 Glycosaminoglycan binding proteins [BR:clum00536]
    117750562 (col4a1)
Exosome [BR:clum04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   117750562 (col4a1)
Glycosaminoglycan binding proteins [BR:clum00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   117750562 (col4a1)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 117750562
NCBI-ProteinID: XP_034417717
Ensembl: ENSCLMG00005013947
LinkDB
Position
21
AA seq 1611 aa
MPPSRGRQWEQHPGERGFPGLQGNMGFPGMQGHEGPAGPMGPAGDLGEHGASGLKGVRGP
PGLPGFPGNPGLPGINGNDGPPGMHGIPGCNGTKGDRGGDGTPGYAGLQGPPGISGIPGM
KGDPGGVIGIVPVKGDRGFPGTPGLPGSSGSHGPIGPPGHRGYQGPKGETGFPGPPGEMG
DKLSFESEKGDKGDPGFRGPPGPPGPPSQGVEGHTTVHIAGPPGEKGGPGNKGDKGYCIP
YHNGVKGEAGPPGSIGKSGKNGEDGLKGEKGFSGSTGYTGSQGEKGERGPPGHGDGSPGP
SGSPGFPGLQGEKGFPGPQGEAGPPGRYMEGPRGESGQKGTVGEKGDRGVEGESLVGPPG
QPGTSGKAGPPGLPLDPNECDIEKGAPGPAGPPGLQGELGQKGDIGDTCVQCESFGPPGF
PGAEGPKGDRGPPGPVGGKGEKGVSGFSGQPGRPGSAGIPGLIGTPGAVGEPGDIFAAPG
LKGDKGLPGLSGTPGQPGLDGQPGRDGLPGIPGFKGESAQEGLKGDRGPDGEPGLIGPQG
ERGQPGMPGFGRPGESGEKGSEGRPGIPGTPGLSGAKGESGKGVSTPGPQGVPGPHGQTG
IPGLPGDRGLRGDSGGPGFPGHKGEQGPPGIGLPGPTGPKGISGLPGASGLPGDPGRPGQ
EGLNGQPGTPGPKGEPGQGLPGLKGSQGPQGIIGFEGEKGNIGQPGVPGREGQTGPTGPQ
GIKGGVGPPGTPGQVGLPGAPGQGSTGAPGLQGPAGDQGPHGREGVKGEQGYPGPSGLDM
PGPQGETGTPGFPGTPGSKGQSGPPGFPGRDGLLGNQGFKGEMGVMGTPGVPGFPGPPGT
AGSSGLRGDPGITGPRGVIGEIGTKGERGDQGLQGPPGNMSEVDMEHMKGEKGDLGDPGN
SGGTGEKGHRGLPGNPGMPGKNGESGLPGQPGEKGNSGFPGDPGRMGPSGQKGSVGEMGI
PGVSGPKGTKGDIGTSGHPGFRGTDGQRGDKGTSGEPGIGLPGVPGDKGLTGQPGFPGTP
GERGLKGHEGMPGKPGLQGSPGDKGLIGYTGQPGRPGEKGTPGLSGAAGETGRDGRPGEA
GLQGPPGDPGEKGDPGVDGIPGSSGERGDPGLTGQGFPGPHGVLGGKGDKGSPGFPGTPG
HPGVSGIKGDKGFPGSMGPQGETGERGLTGISLEGHKGDKGVAGRVGESGSSGLPGPSGV
PGTDAQKGEKGDQGLPGFQGELGHKGDPGVTGLSGQPGLPGIDGQRGERGLQGVHGFPGT
RGNFGDIGFKGEVGDRGFPGENGKEGPPGPPGPSTFTKGDIGFPGIQGLPGPQGPYGLPG
HKGQQGMTGIPGPKGEDGIPGYNGQSGAKGDTGLPGPQGPRGHPGPSGPDGVPGQVGHPG
PSSMDHGFLVTRHSQTVEVPLCPEGTSLIYDGYSLLYIQGNERSHGQDLGTAGSCLRKFS
PMPFLFCNINNVCNFASRNDYSYWLTSPEPMPMSMAPITGEGIKPFISRCSVCEAPAMVI
AIHSQTIMIPACPRGWDSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHG
RGTCNYYANSYSFWLATIEDSDMFRKPVPTTLKAGNLRTHISRCQVCMKRT
NT seq 4836 nt   +upstreamnt  +downstreamnt
atgccgccatctcgtggcagacagtgggaacagcatccaggtgagcgtggatttcctggt
cttcaaggtaatatgggatttcccggaatgcagggacatgaaggtcctgcaggaccaatg
ggccccgcgggagatctgggtgaacacggagcttctggactgaaaggagtgcggggtcct
cctggtctgccaggtttcccaggaaacccaggactaccaggtatcaatggaaatgatggc
ccaccaggtatgcatggtatcccaggatgcaacgggactaaaggagacagagggggagat
ggcactcctggttatgctggtcttcaaggacctcctggcatctcaggaattcctggaatg
aagggtgaccctggcggtgtcatcgggattgttcccgtgaaaggagacagaggattccct
gggacacctggattacctggatcgagtggatctcatggacccatcggacctccaggacat
cgaggctatcaaggaccaaaaggagaaactggcttccctggccctcctggagagatgggt
gacaagctgtcctttgagagtgagaaaggcgataagggtgacccaggatttcgtggccca
cccggtcctcccggacctccatcccagggagtggaaggacacaccacagtgcacatagct
ggaccaccgggtgagaaaggaggaccagggaataaaggagacaaaggctattgcatccca
tatcataatggggtcaaaggtgaagccggtcctcctggatcaataggtaaatctggtaag
aatggagaggatgggctaaagggagaaaaaggcttctccggatcaactggatacactggt
tctcagggtgaaaagggagaaagaggaccaccaggtcatggtgatggttcccctggtcct
tccggttctcctgggtttccagggttacaaggagaaaaaggttttcctggtcctcaggga
gaggcaggtccaccaggccggtacatggaagggcctcgaggggagagtggtcagaaggga
accgttggtgagaaaggagacaggggtgtagaaggagagtctctcgttggacctccagga
caaccagggacatctggtaaagctggaccacctggactaccgcttgaccctaatgaatgt
gacattgagaaaggagcccctggccctgctggacctccagggttacaaggggaattggga
cagaaaggtgacataggagacacctgtgttcagtgtgaaagcttcggcccacctggattt
cctggagccgaaggacctaaaggagatcgaggacctcctgggccagtaggcggtaaggga
gaaaagggtgtgtctggcttttctggacaacctggaagacccggttctgcaggtattcct
gggttgattggaacaccgggtgccgttggtgagccaggagacatttttgcagctcctggt
ctgaagggggacaaaggtctgcccggtctttctggtacaccagggcagccaggactggac
ggacagccagggagagatggccttccaggtatacctggcttcaaaggagaatcggcccaa
gaaggcctcaagggtgatcgtggaccagatggggagcctggtctaattgggcctcaagga
gagaggggtcaacctggcatgccgggcttcggtcgaccaggagagtctggagagaagggc
agtgaggggagaccaggcattcctggaactcctggactatctggtgcaaaaggtgaatcg
ggtaaaggtgtgagcactcctggacctcaaggagtacctggaccacacgggcaaactggc
atacctggacttccaggtgacagaggcctgcgtggagactctgggggaccagggttccct
ggacacaaaggtgaacaaggcccccctggaattggattaccaggcccaactggccctaaa
ggaatcagtggacttccaggagcttcaggattaccaggagaccctggaagaccaggacag
gaaggcttgaatggacaacctggtacacctggaccaaaaggtgaaccaggacagggtctt
ccaggcttaaaaggttctcagggtccccaaggaattattggcttcgagggagaaaagggt
aacatcggacaacctggtgttcctggacgagaaggccagacgggaccgactgggcctcag
ggaattaaaggtggcgtgggacccccaggaacccctggacaggttggcttaccaggtgct
ccaggtcaaggctccactggagctcctggactgcaaggaccagctggagaccaaggaccg
cacggtagggaaggtgttaagggagaacagggctacccaggtccttctggtctggacatg
ccgggtcctcagggagagacgggaacccccgggttcccaggaaccccaggttctaaagga
caatccgggccaccgggattccccggacgggatggactccttggaaaccaaggttttaaa
ggtgaaatgggggtcatggggacaccgggagtaccaggatttcctggaccacctggtaca
gctggatcttctggactcagaggtgatcccggtattactggacctagaggcgttattgga
gagattggaactaaaggagaaaggggagaccaaggtcttcaaggccctcctgggaacatg
agcgaggtcgacatggagcacatgaagggggagaagggagacctcggagacccaggtaac
tctgggggcactggagaaaagggccaccgtggacttcctggaaaccctggaatgccaggc
aaaaatggagagtctggattacctggacaaccaggtgagaaaggaaactctggttttccc
ggagacccgggcaggatgggaccgagcggtcagaaaggcagtgttggagagatgggaata
ccaggtgtgtctggtccaaagggtactaaaggagatattggtacatcgggacatcctgga
ttcagaggcacagacggacagagaggagacaagggaacatctggtgaaccaggtattggg
cttccaggagttccaggagacaagggtctgacaggccagccaggattcccaggaacacct
ggtgagaggggtctgaagggtcacgagggtatgcccggcaagccaggactgcaaggaagc
ccaggagacaaaggactcattggttacacaggtcagccgggtagaccaggcgagaaggga
accccggggctgtcgggggctgcaggagaaactggtcgtgacggccggcctggtgaagcc
ggcttgcagggaccgcctggtgatcccggagagaagggagatcctggagtggatggtatc
cctggatcttcaggggagagaggagacccaggtttaactggacaaggtttccctggacca
catggggtgcttggtggcaaaggtgacaaaggtagtccgggcttccctggcactccaggt
catcccggcgtctctggtatcaaaggcgacaagggatttccaggttcaatgggaccccag
ggtgagacaggggagagggggctcacaggtatctccctggagggccataagggagacaag
ggagtggcgggacgagttggagaatcaggatcctcaggactaccaggaccctctggcgtg
ccgggcacagatgcccaaaagggagaaaaaggagaccagggcctccctggtttccaggga
gagttgggacacaagggtgaccctggagttactggactttctggacaacctggccttcca
ggtatcgatggacagaggggagagaggggattgcagggtgtccatggcttcccaggtaca
aggggtaatttcggggacattggattcaaaggagaagtcggagacagaggattcccagga
gaaaatggcaaggaaggaccccctggtccccccggccccagcaccttcaccaaaggagac
attgggttcccagggatacaaggcttacctggtccccaggggccatatgggcttcctgga
cacaaaggacaacaaggtatgacaggtattccggggccaaaaggtgaagatggcattcct
ggatataatggtcagtctggagccaaaggagacactggccttccagggccacagggaccc
agaggacaccctggcccctcaggacccgacggtgttccaggtcaagtgggtcaccccggc
ccctcatccatggatcacgggttcctggtgacccgtcacagccaaacggtggaggttcca
ctgtgtcctgagggaacctcgctcatatatgatggctactccttgctctacattcaaggc
aacgaacgctcccacggtcaggacttaggtacggcgggcagctgtctgaggaagttcagc
cccatgcccttcctgttctgtaacatcaacaacgtgtgcaactttgcctctcgtaacgac
tactcctactggctcacctccccggagcccatgcccatgagcatggcacccatcacaggt
gaaggcatcaaacccttcatcagcaggtgttctgtgtgtgaagcgccagccatggtcata
gcaattcacagtcagaccatcatgatcccagcatgccctcgcggctgggactctctctgg
attggatactcctttgtcatgcacactagtgctggtgctgaggggtcaggccaggctttg
gcctctcccggttcctgtttggaggagttccgcagcgctccattcatcgagtgtcacggc
cgaggaacctgcaactactacgccaactcctacagcttttggcttgccaccattgaagac
agtgatatgtttaggaaacctgtccccacaacgctaaaagcaggcaatctccgaacacac
ataagccgctgtcaggtgtgcatgaagaggacataa

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