Cyclopterus lumpus (lumpfish): 117751031
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Entry
117751031 CDS
T09199
Symbol
mid1
Name
(RefSeq) E3 ubiquitin-protein ligase Midline-1 isoform X1
KO
K08285
midline 1 [EC:
2.3.2.27
]
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
117751031 (mid1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
clum04121
]
117751031 (mid1)
Enzymes [BR:
clum01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117751031 (mid1)
Ubiquitin system [BR:
clum04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
117751031 (mid1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COS
SPRY
ANCHR-like_BBOX
zf-B_box
fn3
zf-RING_UBOX
RING_XB3-XBAT31
PRY
zf-C3HC4_4
zf-C3HC4
zf-C3HC4_2
Pur_ac_phosph_N
zf-RING_2
zf-C3HC4_3
FN3_DSCAM-DSCAML_C
zf-RING_5
TRIM_CC
OCD_Mu_crystall
Fn3_Dep-1_3rd
Motif
Other DBs
NCBI-GeneID:
117751031
NCBI-ProteinID:
XP_034418424
Ensembl:
ENSCLMG00005015698
LinkDB
All DBs
Position
21:9518406..9542534
Genome browser
AA seq
690 aa
AA seq
DB search
METLESELTCPICLELFEDPLLLPCAHSLCFNCAHRILVSHCTPSEPIQSISAFQCPTCR
YVITLNQRGLEGLKRNVTLQNIIDRYQKASLSGPNSPNETRRERAVPDSKAMTCPGDRVQ
CQFCEQDPPQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPLLDSHPRGLMCLEH
EDEKVNMYCVTDEQLICALCKLVGRHRDHHVAALGDRFDKLKKPSGRFLCVVGRGHSHQE
ADQQALDCNLSSLIKRTSELESLMGKLIQTCQHVEVNASRQENKLLEESDLLITIIQQRR
LIIATKIKEGKSMRLRKLAQQIASCKQCIERSSSLITQADHTLKETDQARFLQTAKSTCD
RVSMATASSQILLPEMNLSDTFDTFALDFTREKKMLESLDYLTAPNPPTIREELSTASYD
TITVHWTTDDEFSVVSYELQYAIYTSQSNVVSLCNSADSWMIVPNIKQNHYTVHGLQCGT
KYIFIVKAINQAGNRSSEHGKLKTNSQPFKLDPKSAHRKLRVSHDNLTVERDETSSKKSH
SQDRFSSQSSYGITGNVYIDSGRHYWEALIGGSSWFAVGIAYKSAPKHEWVGKNSASWVL
SRCNNSWVVRHNSKEMPIEPSPHLRRLGVLLDYDAGLLSFYDAVGAQHLHTFDIAFVQPV
CPVFNVWNRCLTVLTGLPIPDHLEGIDYNN
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atggaaacgctggagtcggaactgacctgcccaatctgtctggagctcttcgaggacccg
ctgctcttgccctgtgctcacagcctttgtttcaactgtgcccatcgtattctggtctca
cactgcacgcccagcgagccaatacaatccatcagcgcctttcagtgcccgacctgtcgc
tatgtcatcaccctcaaccagaggggcctagagggactcaaacgcaacgttacattacag
aacatcatcgatcgctaccagaaagcttctctcagcggacctaattccccgaacgagact
cggcgcgagcgagccgtccccgacagcaaagccatgacttgtcccggtgaccgggtgcag
tgtcagttctgtgagcaggaccctcctcaggacgctgtgaagacctgcgtcacctgtgag
gtgtcatactgtgacgagtgcctcaaggccacccaccccaacaagaagccgttcacgggc
caccggctcatcgagcccttgctcgactcccatccgcgagggcttatgtgtcttgagcat
gaggatgagaaggtcaacatgtactgtgtgacagatgaacagttgatctgtgcattgtgt
aagctggtgggccgacaccgggaccaccacgttgcagccctcggggaccgatttgacaaa
ctcaagaaaccgtccggccgttttctctgtgtggtggggcgtggtcattcacaccaggag
gccgaccagcaagctttggattgcaacctcagcagtctaatcaagaggaccagtgagttg
gaaagtcttatggggaaactcatccaaacctgccaacatgtggaggtaaatgcatcgcga
caagaaaacaagctgctggaggagtctgacctgctaattactatcatacagcaacgaaga
ctaatcatagcaaccaagataaaggaggggaagtctatgcggctgaggaaactagcccag
cagatagccagctgcaagcagtgcattgagaggtcttcctccctcatcactcaggccgac
cacactctcaaggagacggaccaggctcgcttcctccaaacggctaaaagcacctgtgac
agagtttccatggcaacggcctcctctcaaatcctgttaccagaaatgaacctgagtgac
acctttgatacttttgctttggacttcacacgggagaaaaaaatgctcgaaagcttggat
tacctcacagctccaaatccgccaacaatccgtgaggaattaagtacagcttcatacgac
acgatcacagttcactggacaacagatgatgaattctctgttgtatcatatgaacttcag
tacgccatctacaccagccaatccaatgttgtcagtttgtgcaactctgctgacagttgg
atgattgtaccaaacatcaagcaaaatcactacaccgtccacgggctccagtgtggcacc
aagtatattttcatagtgaaggccataaaccaggctggaaaccgcagcagtgaacatggg
aaactcaagaccaacagtcaaccattcaagttagacccaaagtcagctcaccggaagctg
agggtgtcccatgacaacctgacggtggagagggacgagacgtcgtccaagaagagccac
agtcaggaccgcttctccagccaaagcagctacggtatcacagggaatgtctacatcgac
agcggccgccattactgggaagctctgattggaggaagctcatggtttgcagtgggtatt
gcatacaagtcagcaccaaaacatgagtgggtcggcaaaaactctgcttcctgggtactg
tctcgatgcaacaactcgtgggtggtgcgtcacaacagtaaggagatgcccatcgagccc
tcaccccacctgcgtcgtctcggagtgctgttggactatgacgctggattgctgtctttc
tatgacgctgtcggcgctcagcacttgcatacattcgatatcgccttcgttcaaccagtc
tgcccagtgttcaatgtgtggaacaggtgtttaacagtcctcaccggactgcccatccca
gatcacttggaggggatagactacaacaactga
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