Cyclopterus lumpus (lumpfish): 117751443
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Entry
117751443 CDS
T09199
Symbol
cdh16
Name
(RefSeq) cadherin-16
KO
K06810
cadherin 16, KSP-cadherin
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
clum04515
]
117751443 (cdh16)
Cell adhesion molecules [BR:
clum04515
]
Cadherins
Major cadherins
117751443 (cdh16)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_CELSR2_9th
Cadherin_4
Big_9
InlK_D3
Protocadherin
Motif
Other DBs
NCBI-GeneID:
117751443
NCBI-ProteinID:
XP_034419197
LinkDB
All DBs
Position
3:11453931..11481847
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AA seq
879 aa
AA seq
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MERHWPLVLLAGNKVVKHLHLKVLTINPPKEYKCAIFPPNLNSSHASQREHTYHLDKAPM
ADRGATTMRILLVVLYTFAPCSGANVKIGVPENYDGIFPWYLSKLHSLPGNYSDLVVTGD
DEGIFGVDAQFLYALKPLDREKQPSYSLQVSFRTSEHRQSFTVEVCVIDKNDNVPTIIEE
SMRGSVQLGLLKGIPFMQVEARDRDDRNTAHAELRFTLMEQTPRIPSSQMFFINSITGEV
SLTEEGASTLDPEMCGRYKLSVMVKDMAGRANAFFSSGIVTVEVTGNTWASPDPVRLQEN
LPGPYPIRISQVKWSGSQAEYSLEGEFPEMLFTINREGVIYLNAPLDRETQDQFQISIVV
ERPDGKEIAKPVELRVMVGDANDNRPTFPQAQYHTVVKELSARGTEILTVQAADNDDPKT
DNVRIFYRLVGQIPESPRALFRVDRDSGVISVQADSMEGTAPQYTLTITAEDAKGLNSSC
TVVVTVQDENNNPPLFSQHEYGPFHIPEEAAVGTTVTAVLAGDADVRGGDSWQVDYRLES
GNEEEVFTLVTDTQTNEVSLILSKVLDFERESEYILVISAQNPVALVRGRYGPASTATVS
IYVDDVNEGPILSQSHYEVTVREGEEPGRVIATIRGYDPDSHPIRYSLQGDTKKYFSIGK
YSGELKTVQALDREENSTYTMEVIAVDGRNSSLSASTLVTVQILDVNDNSPVLVGDYSWK
YLCTPRWEDQALVLASRDSDGPQHGGRLNFSLRSDATVRRNWKLTPINDTHTNLSLNILY
LAPEVYTVPFTISDSSSPPRSTFINLPVTVCPCNVRGNCKMAAKQLQGMPTIQSAVGILL
GTFAVIGTILIVVFVRLSYQNPKRPTKTNQERVPLKMSI
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
atggaacgtcactggccattggttttactggcaggaaacaaggtagttaagcatcttcat
ctgaaggtgttaaccattaatccaccgaaggagtacaagtgcgcgatttttccacccaat
ttaaactcctcacacgcctctcagagggaacacacatatcatttggacaaggcacccatg
gctgacagaggagctacgacaatgcgcatcctattggtggtactttacacatttgcacca
tgctctggggcaaatgttaaaattggtgtccctgaaaactacgatggcattttcccatgg
tatctgtccaagctccatagcctgccaggtaattacagcgacctggtggtaacaggggat
gatgaggggatattcggagtcgacgctcagtttctctacgctctaaaaccgctggacaga
gagaaacagccgtcttactccctgcaggtgtccttcagaacgtcagagcaccgccagagc
ttcactgtcgaagtgtgtgtcatcgacaagaacgacaacgtgcccactatcatagaggag
agcatgagaggcagcgtgcagctcgggcttctcaaaggaatcccattcatgcaggtggag
gcacgggatcgggatgaccgcaacaccgcccacgccgagctgcggttcaccctcatggaa
cagacacccaggattccctccagccaaatgttcttcatcaactccatcactggagaagtt
tccctcaccgaggaaggagcctccactcttgacccggagatgtgcggccgttacaagctc
tcagtgatggtgaaggacatggcggggagggcgaacgctttcttctccagcggcatcgtt
accgtcgaggtgacgggaaacacctgggcatcgcccgaccctgtccgactccaggagaac
ctccctggtccctacccgatccgcatctcacaggtcaaatggagtgggagccaggcagag
tacagtctggagggggagtttccagagatgctcttcaccatcaacagagaaggagtcatt
tatctcaacgcccctctggacagagagacacaggaccagttccagatcagcattgtggtt
gagcgtccagatggaaaagagattgccaagcctgtggaattgagggtgatggtgggcgac
gccaatgataacagacccaccttcccacaggcacagtaccatactgtggtcaaggaactg
tccgctcgagggacagaaatcctgacagtgcaggcggccgataacgacgatcccaagaca
gacaacgtgcggatattctaccgtttagttggtcaaattccagagagtcctcgcgccctc
ttccgagtggaccgtgactcaggggtcatctccgtgcaagcagacagtatggagggaaca
gcgcctcaatacactctcaccatcactgctgaggatgctaaaggtctaaacagttcatgc
accgtggtcgtgacggtgcaggatgagaacaacaacccgccactcttctcccaacacgag
tatgggccctttcacattccagaggaggctgcagtgggcaccacggtaacagctgtgctg
gcaggtgatgcagatgtccgcggaggagacagctggcaggtggactaccggttagagtct
ggaaacgaggaggaggtctttacattggtgacagacacgcagaccaatgaggtctccctc
atcctttcaaaggtcttggactttgagcgtgagagtgagtatatcctcgtgatcagtgct
cagaacccagtggctctggtccgtggccgttacggtcctgcgtcaacggcaacagtctcc
atctatgtcgacgatgtgaatgaaggcccgatcttgtctcaaagccattatgaggtgact
gtcagagagggggaggaaccgggacgggttatcgccaccatcagaggttacgaccctgat
tctcacccaatcagatattctcttcaaggggacaccaagaaatatttttcaatagggaag
tattctggtgaactaaagactgtgcaggccttggacagagaggagaacagcacgtacacc
atggaggtcattgcagtggatggccgaaactcatccttgtctgcgtccaccctggtgacg
gtccaaatcctggatgtgaacgacaacagcccagtgctggtcggagactattcctggaag
tacctgtgtacgcctcgctgggaggaccaagctctggtgctggcctcacgggacagtgat
gggccacagcacggaggacgtctgaacttctccctgcgcagcgatgccacagtccgtcgt
aactggaagctcacacctattaatgatactcacaccaacctgtccttaaacatcctgtac
ctggcccctgaggtctacactgtgccctttaccatctctgacagcagctctcctcccagg
agcaccttcataaacttgccagtgacagtgtgtccctgtaacgtacgagggaactgcaaa
atggctgccaagcagttgcagggcatgccaactattcagtctgcagtgggtattctgctt
ggcacctttgcagtcatcgggactattctcatcgttgtgtttgtgagactctcctaccag
aatcccaaaaggcccaccaaaactaaccaggagcgagttcccctgaagatgtcaatctaa
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