Colletotrichum lupini: CLUP02_00713
Help
Entry
CLUP02_00713 CDS
T08561
Name
(RefSeq) TFIIH p62 subunit domain-containing protein
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
clup
Colletotrichum lupini
Pathway
clup03022
Basal transcription factors
clup03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
clup00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
CLUP02_00713
09124 Replication and repair
03420 Nucleotide excision repair
CLUP02_00713
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
clup03021
]
CLUP02_00713
03400 DNA repair and recombination proteins [BR:
clup03400
]
CLUP02_00713
Transcription machinery [BR:
clup03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
CLUP02_00713
DNA repair and recombination proteins [BR:
clup03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
CLUP02_00713
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH_TFIIH
BSD
Motif
Other DBs
NCBI-GeneID:
73334770
NCBI-ProteinID:
XP_049135717
UniProt:
A0A9Q8SBW9
LinkDB
All DBs
Position
1:join(2550775..2550916,2550969..2552803)
Genome browser
AA seq
658 aa
AA seq
DB search
MAIPSGRTAFKKKDGVLTLTPDQQSVIWTPAPGNGPPTVSLVIANISNLQQTPDSAAKVM
LKIFEKPPDATEQVPYLFHFTSPEARSEANAIKDLLSRLLADIRSGDPNVPKPSGNSTPN
AANGANGASGGGGGAGGGSSMAFASSANAKPNSARWFDDAQLKGDIELQQSLMKKDRTLH
QTYMDARATKPESISDAAFNAQFWSTRTNLLRAHAIEVNQQKGAYNVLPAIKPRLENDVL
KLDITVEMVQLIMAQHPLVKRLYDENVPKVPESEFWSRFFLSKLFRTLKGDRITDERKEG
IKRDALFDAHDASENTTMFQRKSMAQSVPHIIDVHGNEENQGGFRSGNQKDVEMRPRKNV
PIVNTLNSLSERMLANVAPSDRDTGAEAEEDSTWAEIALRDLRGDAKENKIILNIKEQNR
FFAKKDEAKSANALAFAKQNPSDVLFDIQTDLETIETDGAGGLNLRAGIGIVDDSDSDDG
GTRRPPHVGSRAARKAAGDDIMKGIRQRRAQKYGDTAADESRPMGLPVEVAERCQLTHAT
TVEFLHQFWNAFLSGDPDRANELQYLVESLKRSAERIHAVADEAEKTRDDIIRAKKKEIM
DHYKATGKKIRGWRPEHEKGGRKAVLAIMQPTLEALKRAQGDYQRALAAEGVQLSTEA
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atggcgataccgtcaggtcgtacggccttcaagaagaaggatggtgtcttgaccttgacg
ccggatcaacagtccgtcatctggactccagcacctgggaatggcccgcctacggtctcc
ctggtcattgctaatatctcaaatttgcaacagacaccagacagcgcagcaaaggttatg
ctcaaaatctttgagaagcctccagatgcaacagaacaagtgccctacctcttccacttc
acatcaccagaagccaggtctgaggccaacgccatcaaggacctgctctcgaggctgttg
gccgatatccgctccggcgatcccaatgtccccaaaccctccggcaactcaaccccgaac
gcggccaacggcgcaaatggtgccagcggtggtggcggcggcgctggcggcggctcgtcc
atggcgttcgccagctccgccaacgcgaagcccaacagcgctcgctggttcgacgacgcc
cagctcaagggtgacattgagctgcagcagtcccttatgaagaaggaccgcactctacac
cagacgtacatggacgcgcgcgcgaccaagcccgaatcgatatcggacgcggcctttaac
gcccagttctggtcgacgcgcacaaacttgctgcgtgcccacgccatcgaggtgaaccag
caaaagggcgcgtacaatgtcctccccgcgataaagccgcggctggagaacgacgtgctc
aagctcgacatcaccgtcgagatggtccagctcatcatggcgcagcacccgctcgtcaag
cggctctacgacgaaaacgtgcccaaggtccccgagagcgaattttggtcccgcttcttt
ctcagcaagctcttccgcacgctgaagggagataggatcacggacgagagaaaggagggc
atcaagcgcgacgcgctgtttgacgcccatgatgccagcgagaacacgacaatgttccag
cgcaagagcatggcgcagagcgtgccgcacatcattgacgtccacggcaacgaggagaac
cagggcggcttccggagcggaaaccaaaaggatgtcgagatgcgcccgcgcaaaaatgtg
cctattgtaaataccctcaacagtctcagcgagcgtatgctcgccaacgtggccccctcg
gaccgcgataccggcgccgaggccgaagaagactcgacgtgggcggagattgccctccgc
gacctgcgcggcgacgcaaaggagaacaaaatcatactcaacatcaaggagcagaaccgc
ttctttgcgaaaaaagacgaggccaaatccgcaaacgccctcgctttcgccaagcagaac
ccctcggacgtcctatttgacatccagaccgacctcgagaccattgagacggacggcgcc
ggcggcctcaacctccgcgcgggcatcggcatcgtcgacgacagcgacagcgacgacgga
ggaacgcggcgcccgccccacgtcggctcccgcgccgcgcgcaaagccgcgggcgacgac
atcatgaagggcattcggcagcgccgcgcgcaaaagtacggcgacacggcggcggacgag
tcccgccccatgggcctgcccgtcgaggtcgcggagcggtgccagctgacgcacgccacg
acggtcgagttcctgcaccagttctggaacgcgtttctgtcgggcgacccggaccgcgcc
aacgagctgcagtacctcgtcgagtccctcaagcgctcggccgagcgtatccacgccgtc
gccgacgaggcggagaagacgcgcgacgacatcatccgggccaagaagaaggagattatg
gatcactacaaggcgacggggaagaagattcgcgggtggcggcctgagcatgaaaagggt
ggcaggaaggccgtgctggcgattatgcagccgacgctcgaggcgctgaagagggcgcag
ggggattatcagcgggctcttgctgctgagggggttcagctttccaccgaggcctga
DBGET
integrated database retrieval system
