Colletotrichum lupini: CLUP02_00730
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Entry
CLUP02_00730 CDS
T08561
Name
(RefSeq) histone deacetylase
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
clup
Colletotrichum lupini
Brite
KEGG Orthology (KO) [BR:
clup00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
clup01009
]
CLUP02_00730
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clup03019
]
CLUP02_00730
04131 Membrane trafficking [BR:
clup04131
]
CLUP02_00730
03036 Chromosome and associated proteins [BR:
clup03036
]
CLUP02_00730
Enzymes [BR:
clup01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
CLUP02_00730
Protein phosphatases and associated proteins [BR:
clup01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
CLUP02_00730
Messenger RNA biogenesis [BR:
clup03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
CLUP02_00730
Membrane trafficking [BR:
clup04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
CLUP02_00730
Chromosome and associated proteins [BR:
clup03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
CLUP02_00730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Arb2
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
73334787
NCBI-ProteinID:
XP_049135734
LinkDB
All DBs
Position
1:join(2604852..2606760,2606821..2607140)
Genome browser
AA seq
742 aa
AA seq
DB search
MEGGDPDVVMGGDDKPSNNITTTNGIPVPADGVQKDENTTSPDDEDEEDEEDYEEILNDD
SIRRRGLLPTACCYDDRMKLHVNADFGTTPHHPEDPRRIEEIFKAFKRNGLVFNGPESKI
TEVMRHNPSKYMWRIGAREATKEEILTTHTPLHYHWVESLSKMDYPTLRETSRQYDQGRA
SLYVGSLTFTAALLSCGGAIDTCKHVVEGNVKNAFAVIRPPGHHAEYDQPLGFCFFNNVP
VAVKICQQEYPEACRKVLILDWDVHHGNGIQNIFYDDPNVLYISLHVYQNGQFYPGPPEN
AEIPDGGLEHCGTGPGLGKNINIGWHDQGMGDGEYIAAFQKIIMPIAKEFNPDLVVISAG
FDAADGDELGGCFVSPACYSHMTHMLMSLAEGKVVVCLEGGYNLQAISTSAVSVARTLMG
EPPPKMNLPSLNKDAARVLAKVQSYHAPYWECMRPGIIPMPDIQDLHVTRLNDHIRLGQR
QALSQRHQMIPLFIQRDMLFKSYENQVLVTPDIPSARRILIIFHDPPEVLAQPDVVDRHV
EAHNAWVVDSVEQYIDWAVGQGIAVMDVNVPNKVLRDEDMEPYTQQTGEIELLGELQELA
NYLWDNYIQLYEEADDILLLGVGRSYSGVRALLTGRDCKAKIAGVACFIKGMLRPVKSDV
DTELAPWYKDHSQIYVEHDHACWSRADTKHRVSKRRFGTVIRSPENGTQKMAQAHAKEVQ
NWMLDMLAARQNGDTTEDDKMA
NT seq
2229 nt
NT seq
+upstream
nt +downstream
nt
atggaaggcggcgacccggacgtcgtcatgggcggggatgataagccttcaaataacatc
acgactaccaatggaattccagtgcctgctgacggggtacaaaaagacgagaataccaca
tcgcccgacgacgaggatgaggaggacgaagaggactatgaagaaattctaaacgatgac
tcgattcgcagacgaggactactacccacggcatgttgctacgatgaccgcatgaagctt
cacgtcaacgccgactttgggactacgcctcatcacccggaagaccctcgccgaatagag
gaaattttcaaagcattcaagaggaatggcttagttttcaatggcccggaaagcaaaatc
acggaggtgatgcgtcacaacccgtcgaaatacatgtggaggattggcgctcgagaagca
actaaggaagaaattcttaccacacacactccgctgcactatcactgggtcgagagccta
tcgaagatggactaccccacgctacgagaaacgagtcggcaatatgatcaaggccgtgcc
tcgctttacgtgggcagtctgacattcacggcagcccttctctcctgcggcggcgccatc
gacacctgcaagcatgtcgtcgagggcaacgtcaagaatgcctttgctgtcatcagaccc
ccgggccatcatgcagagtacgaccaacccctcggcttctgcttcttcaacaacgtgccc
gtcgccgtcaagatctgccagcaagaatatccagaggcctgcagaaaggtactgatttta
gactgggacgttcatcacggcaatggcattcagaatattttctacgacgacccgaatgtt
ctgtacatctccctccatgtctaccaaaacggacagttctaccctggcccgccagagaat
gcggaaataccggatggaggtctcgagcactgcggtacagggcctggactgggaaagaat
atcaacattggatggcacgatcagggtatgggggatggcgagtacatcgccgcctttcaa
aagatcatcatgcctatcgccaaggagttcaatcccgacctggttgtcatatccgcagga
ttcgatgctgccgacggagacgagctcggtggatgcttcgtgagccctgcttgctactca
cacatgacccacatgctcatgtccttggcagaaggcaaggtcgtcgtgtgtctggagggt
ggctacaacctgcaagccatctcaacgtcagcggtatcagttgctcgtacgctgatggga
gaaccgccaccgaagatgaatctgccatctctgaacaaggacgcggccagggtcctcgcc
aaggtgcagagctaccacgcgccgtactgggaatgcatgagacctggcattatcccgatg
ccggatattcaagatctgcatgttacaagactcaacgaccacatcaggctcggccaaagg
caagcactgtcacaacgccatcagatgattcctcttttcatacaaagagatatgctcttt
aaatcctacgagaatcaggtcctcgtaacaccagatattccgtccgcacggcgtattctc
atcatctttcatgatccgccggaggtgttggctcaacctgatgtggttgaccgccacgtg
gaggcccataatgcctgggtagttgatagcgtcgaacagtacatcgattgggctgttggc
caaggcattgcagtcatggatgtcaacgtcccgaacaaggttctacgagacgaagatatg
gaaccttacacccagcagacaggagagattgagctcctgggcgaacttcaggagctggcg
aactacctatgggacaactacatccagctctacgaggaggccgacgacattcttcttctt
ggtgtaggtcggtcgtatagtggagttagggcgcttctgactggacgagactgcaaagcc
aaaattgctggagtcgcctgcttcatcaagggaatgttgcgacccgtcaagtctgacgtc
gacaccgagcttgcaccctggtataaggatcactctcaaatctacgtcgagcatgatcac
gcgtgctggtctcgtgcagacacaaagcacagagtaagtaagcgccgcttcggcacagtg
attcggagtccggagaacggtacccagaagatggcgcaggcccatgccaaggaggtccag
aattggatgctggatatgctcgcggctcggcagaatggtgatactacggaggatgacaag
atggcttga
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integrated database retrieval system
