Colletotrichum lupini: CLUP02_00888
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Entry
CLUP02_00888 CDS
T08561
Name
(RefSeq) uncharacterized protein
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
clup
Colletotrichum lupini
Pathway
clup03022
Basal transcription factors
clup03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
clup00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
CLUP02_00888
09124 Replication and repair
03420 Nucleotide excision repair
CLUP02_00888
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
clup03021
]
CLUP02_00888
03400 DNA repair and recombination proteins [BR:
clup03400
]
CLUP02_00888
Transcription machinery [BR:
clup03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
CLUP02_00888
DNA repair and recombination proteins [BR:
clup03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
CLUP02_00888
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
VWA_2
C1_4
Motif
Other DBs
NCBI-GeneID:
73334944
NCBI-ProteinID:
XP_049135891
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All DBs
Position
1:join(<3097474..3098225,3098284..3099172)
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AA seq
546 aa
AA seq
DB search
LIALWRPLSLLPTHLSDHPLISYANNPRPARRPAGYLRPLNLRNRATETRRTKQYEDRGL
RSTSSIMADSDGEYHDMSDDDLQVTNGRGGDARKGGKKGKGGNSKARWEEVKRSWEQVTE
GADGSLAVGASLEAEKRRRLLRDTTPLQRGIIRHLVLVLDMSFAMTEKDMLPNRYRVAWA
YAADFVKEYFEQNPISQLGIVGMRDGVALRISEMSGNPTDHLEKLKEFEGQDPSGNPSLQ
NALEMCRGALFHAPSHGTREVLIVFGALLSSDPGDIHTTIDSLISDKIRVTIVGLAAQVA
ICGELCTRTNAGDDTQYSVCMNDAHFRDLLLAATTPPVTRTAAQSTASLLMMGFPSRTLA
QGETTAVCACHKKPAREGYLCTRCATRVCRLPIECPACSLTLILSTHLARSYHHLFPLRN
WIEVTWAAAAKSKACYSCLTNFPEPPKASKKKDKGKDQDGVATTTGPVAPTPVKAAELKG
VSESGRYACTVCDNHFCIDCDVYAHEVIHNCPGCQSDTRGAAMEVINETNGTHEHQTNGT
AMVVDS
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
ctcatagccttgtggcgcccactttcacttcttccaactcacctgtccgatcacccattg
atttcctacgcaaataatccgcgacctgctagacgtcccgctgggtatttgcgaccgctg
aacttacgaaatcgagcgaccgaaacccgacgtacgaagcaatacgaagatcggggcctc
cgatcgacgtcatccatcatggccgactccgatggcgagtaccatgacatgtctgatgac
gacttgcaggtgaccaacggtagaggcggcgatgcgagaaaaggtggaaagaaggggaaa
ggcggcaattccaaggcgcgatgggaggaggtcaagcgaagttgggagcaagtcacagag
ggcgctgacggcagtctcgcggtcggggcaagcttggaggccgagaagaggaggaggctg
ctgagagacacaacgccactgcagcgcggcattatcagacatctggtgctggtgctagac
atgtcattcgccatgaccgagaaggacatgctcccgaaccgctatcgtgtagcctgggcg
tacgcggccgacttcgtgaaggagtacttcgaacagaacccaatctcgcagctgggcatc
gtcggcatgcgggatggcgtggctctacgaatcagcgagatgagcggcaatccgacagac
cacctggagaagctgaaagaattcgagggccaagatccgtcaggcaacccaagtttgcag
aatgcgcttgagatgtgtcgcggtgcccttttccacgcaccttcccacggcacacgagaa
gtcctaatagtatttggcgccctcctctcctccgacccgggcgacatccataccacaata
gactccctcatatccgataaaatccgcgttaccatcgtcggcctcgcggcgcaggtcgcc
atctgcggagaactatgcacccgcaccaacgccggcgacgacacgcagtacagcgtctgc
atgaacgatgcccacttccgcgatctcctcctcgccgccacgaccccacccgttacccgg
acggccgcccagagcaccgcttctctgctcatgatgggcttcccctcgcgcactctcgcg
cagggcgagacgacagccgtatgcgcctgccataaaaaacccgcccgcgaaggctatctc
tgcacgcgatgcgctacccgcgtgtgtcgtctgcccatcgagtgtcccgcctgtagtttg
acgctcatcctctccacccatctcgcgcgctcataccaccatctatttccgttacggaac
tggatcgaggtcacctgggccgcggccgccaagtcgaaagcatgctattcgtgcctcacc
aactttccggaaccgcccaaggcctccaagaagaaggacaagggcaaggaccaagatggc
gtggctacgacgacagggcccgttgccccgaccccggtgaaagcggcagagctgaagggg
gttagtgaaagcggacggtacgcctgcacggtgtgtgataatcacttttgcatcgactgc
gacgtctacgcgcatgaggtcattcacaactgccctggatgccaaagtgacacccgtggg
gcggcgatggaggtgattaacgagacgaatgggacgcatgagcatcaaaccaatggaacg
gctatggtggtggactcatga
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