Colletotrichum lupini: CLUP02_01104
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Entry
CLUP02_01104 CDS
T08561
Name
(RefSeq) transcription factor tfb4
KO
K03143
transcription initiation factor TFIIH subunit 3
Organism
clup
Colletotrichum lupini
Pathway
clup03022
Basal transcription factors
clup03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
clup00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
CLUP02_01104
09124 Replication and repair
03420 Nucleotide excision repair
CLUP02_01104
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
clup03021
]
CLUP02_01104
03400 DNA repair and recombination proteins [BR:
clup03400
]
CLUP02_01104
Transcription machinery [BR:
clup03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
CLUP02_01104
DNA repair and recombination proteins [BR:
clup03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
CLUP02_01104
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb4
Motif
Other DBs
NCBI-GeneID:
73335156
NCBI-ProteinID:
XP_049136103
UniProt:
A0A9Q8W8B6
LinkDB
All DBs
Position
1:3816386..3817480
Genome browser
AA seq
364 aa
AA seq
DB search
MNAVDASDHYEVSSHEATPSLLSIVIDTNPRAWAALNDILPLSKAIANILVFVNAHLAFS
NANQVAIIASHSNRAVWLYPSKPGAATNGSANSEDVAMTGIDSFAPTPNQSSANKFPQFA
QIEAAVMAAMRQLVDATTEADLACTTTQLSGALTLALTHINKTSLSLNETNKAPDVARPT
SSALSRLRARIFILSVSDSEPVQYISTMNAVFAAAHSQIPIDTLALSGDATFLQQASYIT
DGTFMQAASPHGLLSYLMFAYSADAEARSSLIPPTHHTVDFRAACFCHGRVVDTGFVCSI
CLSIFCDVPENSECLTCGTKLSLGSYGAKPAVIPRRKKKKKKTVLANGHIREETGSAAGT
PRPG
NT seq
1095 nt
NT seq
+upstream
nt +downstream
nt
atgaacgccgtcgacgcttcagaccactacgaggtctcctcacacgaggccaccccttcc
ctcttgtccattgtcatcgacacgaaccctcgagcctgggccgccctcaacgatatcctc
ccactttcaaaagccatcgccaacatcctggtcttcgtcaacgctcacctcgctttcagc
aatgcgaaccaggtcgccatcatcgcctctcacagcaaccgtgccgtatggctctaccct
tcaaagcctggcgccgccacaaacggcagcgcaaactctgaagatgtcgcaatgacgggc
atcgactcctttgcgccgacccccaaccagtcttcggccaacaagttccctcaattcgcc
cagatcgaggctgccgtcatggccgcgatgcgccagctggtcgacgcaactaccgaggcc
gacctagcctgcacgacgacacagctctcaggcgccctcaccctcgccctcacacacatc
aacaagacctctctctcgctcaacgagaccaacaaggcccccgacgtggcccgcccgacc
tcctccgccctcagccgcctccgcgcccgaatctttatcctctccgtctccgactcggag
cccgtccagtacatctccaccatgaatgccgtcttcgccgccgcccactcccagatcccc
atcgacaccctcgccctgtccggcgacgcaaccttcctccagcaggcgagctacatcacc
gacggcaccttcatgcaagccgccagcccacacggcctcctcagctacctcatgttcgcc
tactccgccgacgcagaggctcgctcttccctcatcccgccaacccatcacaccgtcgac
ttccgcgccgcctgcttctgccacggccgcgtcgtcgacacgggcttcgtctgcagcatc
tgcctcagcatcttctgcgacgtgcccgaaaactcagagtgcctgacctgcggcacgaag
ctctctctcggcagctatggcgccaagcctgccgttataccgcggaggaaaaagaagaag
aagaagacggtcctggccaacggccatatcagggaggaaacgggcagtgcggcgggcacc
ccccgtccaggataa
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