Colletotrichum lupini: CLUP02_01227
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Entry
CLUP02_01227 CDS
T08561
Name
(RefSeq) RNase3 domain-containing protein
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
clup
Colletotrichum lupini
Pathway
clup03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
clup00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
CLUP02_01227
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clup03019
]
CLUP02_01227
03009 Ribosome biogenesis [BR:
clup03009
]
CLUP02_01227
03036 Chromosome and associated proteins [BR:
clup03036
]
CLUP02_01227
Enzymes [BR:
clup01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
CLUP02_01227
Messenger RNA biogenesis [BR:
clup03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CLUP02_01227
Ribosome biogenesis [BR:
clup03009
]
Eukaryotic type
90S particles
RNase
CLUP02_01227
Prokaryotic type
rRNA processing factors
CLUP02_01227
Chromosome and associated proteins [BR:
clup03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
CLUP02_01227
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
dsrm
Motif
Other DBs
NCBI-GeneID:
73335279
NCBI-ProteinID:
XP_049136226
UniProt:
A0A9Q8SCT6
LinkDB
All DBs
Position
1:join(4173287..4173553,4173607..4174560)
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AA seq
406 aa
AA seq
DB search
MSKRSSSGMLPPSKRRHAESEAIDLLLDHGDDLIKCLQALTRAKTRSSIHREDLQKIRQL
SKVLLPSFEQLASEGKTEALESGEIDENEGKNASHEKGQSPLTPRQSPVVSGPPIPSFIL
VKPWTPADIPKTMPPLPKITNPVLELAAFTHVGVAKHKSDLSYDRLEWLGDAYVELISSS
LIFQTFGGMSTGQCSQIRELLIRNANLGEYSTHYGLFERANLPSEFKPRGTQPAVAKPHE
IKKVRGDLFEAYVAAVVLSDPINGLTRVAEWLRTLWASTIKDQIRSVAKTPGLQTVKELG
ATVTEESSLPPKVLLSQAIGANGITIRYEDLLNANKKDKYNKKLALFSVGVYLDGWGEKN
KLLGTGSDLNKKEAGQKAAQVALNNKKLLKVYQDKKKAFLAALGEK
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagcgctcgagttcagggatgctaccaccgagcaagcgaaggcatgccgaaagc
gaggcaatagacttgcttctcgatcacggcgatgacctcatcaaatgtctccaggcactg
acccgggccaagacaagatcttctatccatcgcgaagacttgcaaaaaatccggcagctt
agcaaggtgttgttgccatcttttgagcagttggctagtgaaggaaaaacagaagccctc
gaaagcggtgagattgacgagaatgaggggaagaatgcatcccacgagaagggccaatcc
ccattgacaccgaggcaaagcccagtggtctcaggaccgccaataccgtctttcatcttg
gtcaagccatggacgccagccgatattccgaagacaatgccgcctctgccaaaaatcacg
aatcctgtcctagagttggcggccttcacccatgttggcgtggccaagcacaaatcagat
ttgagttatgaccgccttgagtggcttggagacgcctatgtcgaactgatctcatcttcc
ctcattttccaaactttcggagggatgtcaacgggccagtgctcgcagatccgagagctt
ctgattcgtaatgccaacctgggagaatactcaacacactacggactgttcgaaagagcg
aatctgccgtccgagttcaagcccagaggtacccagccggctgtggcaaaaccacatgaa
atcaaaaaggttcgcggtgatttgtttgaagcatacgtcgctgctgtggttctttccgac
cccatcaacggtctcactcgagttgcagagtggctcaggacactatgggcatcgactatc
aaggaccagatcaggtcggttgctaagacgcccgggttgcagacagtcaaggaacttggc
gcgacggtgacagaagagtctagtctgcctccgaaggtccttctcagtcaggctattggt
gcgaacggcatcaccatccgctacgaagacttactcaatgcgaacaagaaagacaagtac
aacaagaagctggccctcttcagcgtcggagtgtaccttgacggatggggcgagaaaaat
aagctccttggaaccggtagcgacttgaataagaaggaggcgggccaaaaggcagcgcaa
gtggcgcttaacaataagaaattgttgaaggtgtatcaggataagaagaaggctttcctg
gcagctcttggggagaaatag
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