KEGG   Colletotrichum lupini: CLUP02_01401
Entry
CLUP02_01401      CDS       T08561                                 
Name
(RefSeq) smg-4/UPF3 family protein
  KO
K14328  regulator of nonsense transcripts 3
Organism
clup  Colletotrichum lupini
Pathway
clup03013  Nucleocytoplasmic transport
clup03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:clup00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    CLUP02_01401
   03015 mRNA surveillance pathway
    CLUP02_01401
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:clup03019]
    CLUP02_01401
Messenger RNA biogenesis [BR:clup03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     CLUP02_01401
   mRNA cycle factors
    P-body specific factors
     CLUP02_01401
SSDB
Motif
Pfam: Smg4_UPF3 RRM_1 DHHA1
Other DBs
NCBI-GeneID: 73335452
NCBI-ProteinID: XP_049136399
LinkDB
Position
1:join(4671508..4671761,4671818..4673522)
AA seq 652 aa
MATSGAQGASRKTNGVLSVSGQQATTDAPKSNKSRSPVEGDKVVIRRLPPGTTEQELWNN
LGDEWKAGNGLVSWHNFEAGKISHDPAKPSRPGRVYLHVLKRESLNTLSNLIQAKSWEDA
KMTSNSASLVGPPVLEFAIYNKVPSSKKRTDPRQGTIDQDPEFMAFLQSLTNPEIDKDNE
SNENKDVEETKPETKVTTTPLIEFLKEKKANKQKEAAAAKSAKQARQDSSTKGKSSASTA
EDSKKGKKDSKGDKSADKPKETVKILTKKATADAVKAAEAVANQITQASSSSSQDQPKSR
RAGIAAAARILQRDLGISPGSAHRRARLDAAKAEADSKGTSSKEPAQPVVEAPAAAPPPV
TAPAPASSAASQTSERNATPTAPKSGRSRRGGGGKNASANEAKGKSTEASGSSSAPAPAK
APVTLLKKKDEEKNKERAAKVDKEASSLNSQPAAAPASAKSNAPTGPKASGKGSNAKKST
AAVTAGVTRGFVKHANPSQGVTEALLKQAMEAFGTVTFVEIDKRKGFAYVDFSDHDGLVK
AVAASPIQVAQGTVQVLERKEKKPAASNSNSNANNSNSSNAANTAAASSSSAPPSTTNAS
NSNATPSEKPEHHKRTRRGRGGGKAAAAGASGSNSGNKDAARESGAPAAGTG
NT seq 1959 nt   +upstreamnt  +downstreamnt
atggcaacctctggcgcccaaggcgcatctcgaaagacaaatggagttctttcggtctcc
ggtcaacaggcaactactgatgcgccaaagtccaataagagtaggagtcccgtcgagggc
gacaaggttgttattcgacgactgccccctggcacgacggagcaagaattatggaacaac
ctaggcgacgaatggaaggctggcaatggcctcgtcagctggcacaattttgaggctggg
aagatctctcatgaccctgcgaagccatcgaggccaggacgagtttatcttcacgttctt
aagcgcgagagccttaacacattgtcgaatctgattcaggccaagtcttgggaagatgca
aagatgacgtccaatagcgcttccctagtcggcccgcccgttctcgagtttgcgatttac
aacaaagtcccgagcagcaaaaagcgcaccgatccaaggcagggaactattgatcaggat
cccgagttcatggcctttttacaatccttgaccaatcctgagattgacaaggacaacgag
agcaatgagaacaaggacgtggaggaaacgaagcccgaaacgaaggtcacaacgacaccg
ttgattgagttcctcaaggagaagaaggccaacaagcagaaagaggctgccgccgctaag
agcgctaagcaggctcggcaggactccagcaccaagggcaagtcgtcggcatcgaccgcg
gaggattcaaagaaaggcaagaaggactctaagggagacaaatcggccgataaacccaaa
gagacggtcaaaatcctcaccaaaaaggctactgcggacgctgttaaggccgcagaagct
gtcgccaaccagatcacgcaggcctcctcttcctcgtctcaggatcagcccaagagtagg
cgagctggtattgcggctgctgcccgcatcttgcagcgagaccttggtatcagccccgga
agcgctcataggagggcacgactcgatgctgccaaagctgaggccgattccaagggaacc
tcatcaaaggaaccagcgcaacccgtggtcgaagccccagcagccgcaccgccacctgtt
acagctccggccccagcatcctcagctgcttcacaaacatccgagagaaacgccacgccc
acggcacctaagtcaggccgttctagaagaggcggcggtggaaagaacgcaagtgccaac
gaagcaaagggcaagtcaaccgaggcgagcggctcttctagcgctccagcacctgccaaa
gccccggtcaccttgctcaagaagaaggacgaggagaagaataaggaaagggctgccaag
gtcgacaaggaagcatcgagtttgaattcgcagccagctgccgcgccagcaagtgccaag
tccaacgcccctaccggtcctaaggcatcaggcaagggcagcaacgcgaagaagagcact
gcggccgttaccgctggtgtgacccgtggtttcgtcaagcacgcaaacccatcgcagggc
gtaaccgaggcactcctcaagcaagccatggaggcctttggcaccgtcacttttgtggaa
atcgataagcgtaagggctttgcctatgtcgacttctccgatcacgatggcctcgtaaag
gcagtcgctgcgagccccatacaggttgcccagggcacagttcaagttctcgagcgcaag
gagaagaagcctgccgcctctaactcgaattcgaacgccaataactccaacagcagcaac
gcagccaataccgcagcagcaagctctagctctgctccaccatcgacgaccaatgcatct
aacagcaacgccacgccttccgagaagccggagcaccataagcggaccaggcgtggtcgt
ggtggtggtaaggccgcggcggctggtgcgtcgggcagcaacagcggcaacaaggatgcg
gcgcgcgagtccggcgcccctgctgcaggcacgggatga

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