Colletotrichum lupini: CLUP02_01418
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Entry
CLUP02_01418 CDS
T08561
Name
(RefSeq) helicase associated domain-containing protein
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
clup
Colletotrichum lupini
Pathway
clup03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
clup00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CLUP02_01418
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
clup03041
]
CLUP02_01418
03009 Ribosome biogenesis [BR:
clup03009
]
CLUP02_01418
Enzymes [BR:
clup01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CLUP02_01418
Spliceosome [BR:
clup03041
]
Complex A
U2 snRNP components
U2 related factors
CLUP02_01418
Complex B
CLUP02_01418
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
CLUP02_01418
Ribosome biogenesis [BR:
clup03009
]
Eukaryotic type
90S particles
Helicases
CLUP02_01418
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
DEAD
Helicase_C
AAA_22
HA2_N
SRP54
AAA_19
T2SSE
Flavi_DEAD
DUF5110
Motif
Other DBs
NCBI-GeneID:
73335469
NCBI-ProteinID:
XP_049136416
LinkDB
All DBs
Position
1:complement(join(4720915..4721031,4721228..4723097,4723160..4723627,4723745..4723758))
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AA seq
822 aa
AA seq
DB search
MSHDHFWEPRLESPPEFDLVDVESTGRNFNQTSLSTPFPSTTLSYRNGEFATTMADFEDK
GSKRLSADREGSRKKVKKEEEYEPKYNPYLAHMKEENGVKSEEGTIDASSPFYGFKPRAT
TSKQHEKIEDLDDNAFTGRPHSQKYFQILEARRDLPVTKQREEFLEKYHSTQILVFVGET
GSGKTTQIPQYVVFDELPQLNRKMVACTQPRRVAAMSVAQRVADEMDVNLGEEVGYSIRF
EDRTSPNTILKYMTDGMLLREAIHDHEMSRYSCIILDEAHERTLATDILMALLKQIAARR
PDLKIVVMSATLDAQKFQRYFNDAPLLAVPGRTHPVEIFYTPEPERDYVEAAIRTVLQIH
ASEGEGDILLFLTGEEEIEDACRKINLEADEMTREIDAGPLVVYPLYGTLPPHQQQKIFD
KAPAPYKKGGRPGRKVIVATNIAETSLTIDGIVYVVDPGFSKQKIYNPRIRVESLLVSPI
SKASAQQRAGRAGRTKPGKCFRLYTEQAFKKELIEQTHPEILRSNLANTVLELKKLGVQD
LVHFDLMDPPAPETMMRALEELNYLACLDDDGELTTLGSLASEFPLDPALAVMLISSPEF
YCSNEILSIVSLLSIPQIWVRPAAQRKRADEMKAQFSHPEGDHLTLLNAYHAFKGTANQP
DVDPKRWCHEHFLSFRHLSSADNVRAQLKRIMEKSDLELVSTPFEDKNYYTNIRRALLSG
FFMQVAMRESSGKVYRTIKDDQAVMMHPSTVLKTDYEWVLYNEFVLTSKQYIRTCTGIRP
EWLLEIAPVYYDIDTFDDGIVKTALVRASEKKRRKEAMKNGR
NT seq
2469 nt
NT seq
+upstream
nt +downstream
nt
atgtctcatgatcatttctgggagcctcgcttggaatcgcctcccgagtttgacctcgtc
gacgtcgaatccacgggccgcaacttcaaccaaacatctctctcaacccctttcccgtcc
accaccctttcgtaccgaaacggggaatttgcgaccacaatggccgacttcgaggataag
ggatcgaagcgcctgagcgccgacagagaaggaagcaggaagaaggtcaagaaggaggaa
gagtacgagcccaagtataacccctacttggcgcatatgaaggaggagaacggtgtcaag
tccgaggagggcaccattgatgccagctcaccattttacggtttcaaaccacgcgccaca
acatcgaagcagcacgagaagattgaagacctcgacgacaacgccttcaccggtcgccct
cactcgcaaaagtacttccagatcctggaagcgcgtcgcgatcttcccgtcacgaagcag
agagaagagttcctcgagaagtaccactctacccaaatcctcgtcttcgtcggtgagacc
ggttccggaaagacgacccagatcccccaatatgtcgtgtttgacgagctccctcagctc
aaccgcaagatggttgcctgcactcagcctcgccgtgttgccgccatgtccgtcgcacag
cgtgttgccgacgagatggacgttaatcttggcgaggaggtcggatacagcattcgtttc
gaggacagaaccagccccaacacgattctcaagtacatgaccgacggtatgcttctccga
gaagctatccacgaccacgagatgtcgcgttatagctgtatcattctcgacgaggcccac
gagcgtactctcgccaccgatatcctgatggccctgctcaagcagatcgccgcccgccgc
cccgacctcaagatcgtggtcatgtccgccaccctcgatgcccaaaagttccagcgctac
ttcaacgatgcgcctcttctcgccgttcccggtcgtacccatcccgtcgagatcttctac
acccccgagcccgagagggactatgtcgaggctgccattcgaacagtattgcagatccat
gcctccgaaggagagggcgatattctactgttcttgaccggtgaggaggagattgaggat
gcctgccggaagatcaacctcgaggccgacgagatgacacgagaaatagacgcgggcccg
ttggtggtttacccgctctacggtactctgccaccgcaccagcagcaaaagatcttcgac
aaggctccggctccgtacaagaagggcggccggccaggacgcaaggtcatcgtggcaacc
aatattgccgagacgtctttgaccattgacggtatcgtctatgtcgtagatcccggcttc
agcaagcaaaagatctacaacccgcgcatccgtgtcgagtctctcttggtctctcccatc
tccaaggcctccgcccagcagcgtgccggtcgtgctggtcgtacaaagcccggaaagtgc
ttccgtctctacaccgagcaggccttcaagaaggagctcatcgagcagacacatcccgag
attctgcgttccaacttggccaacacggttctggaactgaagaagcttggcgtccaggat
ctcgttcacttcgatctcatggaccctcctgcgccggagaccatgatgcgtgcccttgag
gagctgaactacctcgcatgccttgacgacgatggtgagctgaccaccctcggaagtctc
gcctccgagttccccttggacccagctttggcagtcatgcttatctcctcgcccgaattt
tactgctccaacgagattctgtccatcgtctctctactctctatccctcagatctgggtc
cgccccgccgctcagcgtaagcgtgccgacgagatgaaggcgcaattctcgcaccctgaa
ggcgatcatctcacgctcctcaacgcgtaccacgccttcaagggcacggcaaaccagccc
gacgtggaccccaagaggtggtgtcacgagcacttcctctccttccgtcacctcagcagt
gccgacaacgttcgtgcgcagctgaagcgcatcatggagaagtctgacctcgagctcgtg
tcgaccccctttgaggacaagaactactacaccaacatccggcgtgcgctcctttcgggc
ttcttcatgcaggttgccatgagggagagctcgggcaaggtttaccgtaccatcaaggac
gatcaggcagtcatgatgcatccctccacggtcctcaagaccgactacgaatgggtcctt
tacaacgaattcgtcctcacctccaagcagtacattcgtacatgcaccggaatcaggcca
gagtggctacttgaaatcgcacccgtctactacgacattgacacgttcgacgacggaatc
gtcaagaccgccctggtccgggcttcggagaagaagcgcagaaaggaggccatgaagaat
ggtcggtga
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