Colletotrichum lupini: CLUP02_01774
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Entry
CLUP02_01774 CDS
T08561
Name
(RefSeq) DSHCT domain-containing protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
clup
Colletotrichum lupini
Pathway
clup03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clup00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CLUP02_01774
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clup03019
]
CLUP02_01774
03041 Spliceosome [BR:
clup03041
]
CLUP02_01774
03009 Ribosome biogenesis [BR:
clup03009
]
CLUP02_01774
03016 Transfer RNA biogenesis [BR:
clup03016
]
CLUP02_01774
Enzymes [BR:
clup01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CLUP02_01774
Messenger RNA biogenesis [BR:
clup03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
CLUP02_01774
Spliceosome [BR:
clup03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
CLUP02_01774
Complex C
U4/U6.U5 tri-SnRNP related factors
CLUP02_01774
Ribosome biogenesis [BR:
clup03009
]
Eukaryotic type
Pre-60S particles
Helicases
CLUP02_01774
Transfer RNA biogenesis [BR:
clup03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
CLUP02_01774
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
AAA_22
ATPase_2
nSTAND3
AAA_16
Motif
Other DBs
NCBI-GeneID:
73335821
NCBI-ProteinID:
XP_049136768
LinkDB
All DBs
Position
1:join(5933742..5936908,5936962..5937142)
Genome browser
AA seq
1115 aa
AA seq
DB search
MDELFDVFDAQPDAQNESHSEPEPETEVAEPPQKSRKKDKKSKKRKADGGMKNGVAEKPE
DDDMPDADDTSKDGQDADETEDPAAASDEQQEPHKDKRRKKEDEAQPVLTDTFQTAQSRE
VAGAAVFTPAQDESLVLSHNIQHQVALPPDLDYEYIPLSEHKPPAEPARQYSFKLDPFQA
LSVASIEREESVLVSAHTSAGKTVVAEYAIAQCLKRNQRVIYTSPIKALSNQKYRDFEAL
FGDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMREVAWVVFDEIHYMRDKTRGVV
WEETIILLPDKVRYVFLSATIPNAFQFAEWIAKIHHQACHVVYTDFRPTPLQNYFFPAGG
NGIFLVVDEKGVFREGNFQKTMSLIEAGKGQDPNNANASWKGKGAKKQTQKGGQASDMKS
DISKIIRMIMQKSFHPVIVFNFSKKEVENLALQISHFQFNNDSEQAMVKTVFNNAIQSLS
EADRELPQIQNLLPLLQKGIGVHHSGLLPILKETIEILFQESLIKVLVATETFSIGLNMP
AKTVVFTQTNKWDGVQRRPLTPSEYIQMSGRAGRRGLDTRGIVIMMIDDKMEPDTARGMV
VGEQDRLNSAFYLGYNMTLNLLRIEAISPEFMLERCFHQFQTGASVPALERDLVALQQER
DSMSIADEATVKDYYNLRNQLEQYTSDMRAVIQHPEHCTDFMQPGRLVRIHDPKKTNNTI
GGTDFGWGVVANLIRRDRNRKQGEPEYPPQESCLIDVMMVVDQKSAPVAEGSRHLTSDLP
KGLVPYPNPEQPDNGARFEIIPCLLTCVKSISQIRVFMPKDCKSQSALNEVGNSLREVHR
RFPDGLPILDPVENMGINDESFKALMRKIEMLEARLLTNPLHGSPLLPELYLQYRSKEKL
GEQIKSKKKEIATLHSIAQMDELKARKRVLRRLGFLNESEVVELKARVACEISSTEGHEL
VLAELLFDRFFNELSPELIAATLSCFVLDEKLETAALREELAKPYREVQAKAKQVAKVSR
ESKLELNEEEYLAGFKWQLMETVYSWAQGKPFADICKMTNAYEGSLIRLFRRLEELLRQM
GQGAKVMGSDELTQKFEDSLAKIRRDIVAAQSLYL
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
atggacgagcttttcgatgttttcgacgctcaacctgacgcgcaaaacgagtcacacagc
gagcccgagcctgagactgaggtagccgagccccctcagaagtcgcgcaagaaggacaag
aagagcaagaagcgcaaggccgatggtggaatgaagaatggcgtcgccgaaaagccagag
gacgacgacatgcccgacgccgatgatacctccaaggatggccaggacgctgacgaaact
gaagatcccgccgctgcttctgacgaacagcaggagccccataaggacaagcggaggaag
aaggaagatgaggcccagcctgtcttgaccgacaccttccagactgcccagtcccgagag
gttgctggcgccgcggtcttcaccccagcacaggacgaatcgctcgtcctgtcccacaac
atccagcaccaagtcgccttgccgccggacctggactacgaatacatccccctctccgag
cataagccgcccgcggagccagcacgccagtacagctttaagttagatcctttccaggca
ctgtctgtcgcttcgatcgagagggaggagagcgtgttggtttctgcccacacctctgcc
ggaaagaccgtcgtcgccgaatacgccattgcgcaatgtctgaagcgtaaccagagagtc
atttacacaagtcccatcaaggccctcagcaaccagaaataccgagacttcgaagcacta
tttggcgatgtcggtctgatgactggtgatgtcacgatcaatcccaccgccagctgtttg
gtcatgaccaccgagattttgcgctccatgttgtaccgtggttccgagatcatgcgagag
gttgcctgggtcgtctttgacgaaatccactacatgagagacaagaccagaggtgttgtc
tgggaagagaccatcattcttcttcccgataaggtccgctacgtctttttgtccgccacc
attcccaacgccttccagtttgcggagtggattgccaagatccatcaccaggcgtgccac
gtcgtctacactgatttccgtcccacgccccttcaaaactacttcttccctgccggtggt
aatggcatcttcctggttgtcgacgagaagggcgtgttcagagaaggcaactttcagaag
accatgtccctcatcgaggcgggcaagggtcaagaccccaacaacgcgaatgcaagctgg
aagggcaagggagccaagaagcagacacaaaagggtggtcaggcgtccgatatgaagtct
gatatctccaagatcattcgcatgatcatgcagaagagcttccaccctgtcatcgttttc
aacttcagcaaaaaggaggttgagaacctggctctgcagatctctcatttccagttcaac
aatgactcggagcaggccatggtcaagaccgtgttcaacaatgccatccagagcttatct
gaggctgatcgcgagcttcctcagatccagaacctgcttcctctgttgcaaaagggtatc
ggtgtgcatcactctggtcttcttcccattttgaaggagaccatcgagattctgttccaa
gagtctctgatcaaggtgcttgtcgcaaccgaaaccttctccattggtctcaacatgcct
gccaagactgtcgtcttcacccagactaacaagtgggatggagttcaacggagacctctt
accccgtccgagtacattcagatgtctggtcgtgctggtcgtagaggtctggatacgcgt
ggtattgtcatcatgatgattgacgacaagatggagcctgacactgcccgcggcatggtc
gtgggtgagcaggatcgtcttaactccgccttctacctcggctacaacatgacccttaac
ctcttgagaatcgaggctatttcccccgagttcatgcttgagcgttgcttccaccagttc
cagacaggtgctagtgtcccggctttggaacgtgacttggttgctctccagcaagagagg
gacagcatgtccatcgctgatgaggctacggtcaaggactactacaacctccgcaaccag
ctggagcagtacacaagcgacatgcgcgctgtcattcagcaccctgagcactgtaccgac
ttcatgcagcccggccgtctggttcgcattcacgaccccaagaagaccaataacaccatt
ggcggaaccgacttcggctggggtgtcgtggcgaatctgatccgccgcgaccgcaaccgc
aagcaaggcgagcccgaatacccgcctcaggagtcctgcctcatcgacgtcatgatggtt
gtcgaccagaagagcgcacctgttgccgaaggttccaggcatttgacctctgatctgcca
aagggcctggttccctacccgaaccccgaacagccggacaacggagctcgcttcgagatt
atcccctgtcttctgacttgcgtcaagtccatcagccagatcagagtcttcatgcccaag
gactgcaaatctcagtccgcgcttaacgaggttggcaactctcttcgggaggttcacaga
cgcttccccgacggactgcccattttggatcctgttgagaacatgggcatcaatgacgag
tctttcaaagccctgatgaggaagattgagatgttggaggcgcgcctcctcaccaacccc
cttcacggatcaccactgctgcccgagctctaccttcagtatcgctccaaggagaaactt
ggcgagcagatcaagtccaagaagaaggagattgcgacactccacagcattgcgcagatg
gatgagctcaaggcgcgcaagcgtgtcctgcgccgtctcggattccttaacgagtctgag
gttgtcgagcttaaggctcgtgtcgcctgtgagatctcatccaccgaaggtcatgaactt
gttcttgccgagcttctgtttgatcgcttctttaatgagctctctcccgagctcattgct
gctacactcagctgtttcgtcttggacgagaagcttgagacagcagccctgcgcgaggaa
ttggccaagccctaccgggaggttcaggccaaggctaagcaggtcgctaaggtcagccgg
gagagcaagcttgagctcaacgaggaggagtacttggctggcttcaagtggcaattaatg
gagactgtctactcgtgggcacaaggcaagccgtttgcagacatctgtaaaatgaccaat
gcctacgagggttccctgatccgccttttccgccgtctggaagagcttctgcgccagatg
ggccagggcgccaaggtcatgggcagtgacgagcttacacaaaagttcgaggacagtctc
gccaagatccgccgtgacatcgtcgcggcccagagtttgtacctgtaa
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