Colletotrichum lupini: CLUP02_03038
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Entry
CLUP02_03038 CDS
T08561
Name
(RefSeq) RNA recognition domain-containing protein
KO
K12883
nuclear cap-binding protein subunit 2
Organism
clup
Colletotrichum lupini
Pathway
clup03013
Nucleocytoplasmic transport
clup03015
mRNA surveillance pathway
clup03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
clup00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CLUP02_03038
09122 Translation
03013 Nucleocytoplasmic transport
CLUP02_03038
03015 mRNA surveillance pathway
CLUP02_03038
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clup03019
]
CLUP02_03038
03041 Spliceosome [BR:
clup03041
]
CLUP02_03038
Messenger RNA biogenesis [BR:
clup03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
CLUP02_03038
Spliceosome [BR:
clup03041
]
Common components
Common spliceosomal components
Cap binding complex
CLUP02_03038
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Motif
Other DBs
NCBI-GeneID:
73337075
NCBI-ProteinID:
XP_049139208
UniProt:
A0A9Q8SHN9
LinkDB
All DBs
Position
2:join(2526493..2526497,2526557..2526581,2526632..2526793,2526905..2527401,2527473..2527538,2527571..2527628)
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AA seq
270 aa
AA seq
DB search
MPPPSSSPSKASAVSRPSTFNSHLHDRQRTNCPPPQTPNTFRMQVRHRNTVERLDRPSAY
YHNRNKRRRNDNRDAAREARDAEDEAATKNEPLPEDPLANATTLYVGNLSFYTTEEQVYE
LFSKCGEIKRLVMGLDRFNKTPCGFCFVEYYTHQDALDCMKYIGGTKLDERVIRTDLDPG
FEEGRQYGRGKSGGQVRDEYREDFDEGRGGHGRAIQMQRDRDDRMGEYEETASKANGTWG
KTQKENERLYFGQASGNRYPNMTQSWTLKW
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgccaccaccgagttcaagtcccagcaaggcaagtgccgtttctcgaccctcgaccttc
aattcccacttacacgaccgacaacgaaccaattgtcctccaccgcaaacccccaacacc
ttcagaatgcaggtccggcacagaaacacagtagagcgcctcgacaggccgagcgcatac
taccacaaccggaacaagcgcaggagaaacgacaaccgcgacgccgcccgcgaagcccgc
gacgccgaagacgaggccgccaccaagaacgagcccctccccgaggaccccctcgccaac
gcgacgacgctctacgtcggcaacctctccttctacaccaccgaggagcaggtctacgag
ctgttctcaaagtgcggcgagatcaagcgcctcgtcatgggcctcgaccgcttcaacaag
accccctgcggcttctgcttcgtcgagtactacacccaccaggacgccctggactgcatg
aagtacattggcggcaccaagctcgacgagcgcgtcatccgtaccgatctcgaccccggt
tttgaggaggggaggcagtacggtcgtggcaagagcggtgggcaggtgcgtgacgagtac
cgcgaggacttcgacgagggacgtggtgggcatggtagggcgatccagatgcagagggat
cgggacgatcggatgggcgagtatgaggagacggcatcaaaagcaaatggaacgtggggg
aagacgcaaaaggagaacgagagactctactttgggcaggcttctgggaatcgatacccc
aatatgacacaatcatggacattgaaatggtag
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