KEGG   Colletotrichum lupini: CLUP02_03625
Entry
CLUP02_03625      CDS       T08561                                 
Name
(RefSeq) DNA ligase I
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
clup  Colletotrichum lupini
Pathway
clup03030  DNA replication
clup03410  Base excision repair
clup03420  Nucleotide excision repair
clup03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:clup00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CLUP02_03625
   03410 Base excision repair
    CLUP02_03625
   03420 Nucleotide excision repair
    CLUP02_03625
   03430 Mismatch repair
    CLUP02_03625
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:clup03032]
    CLUP02_03625
   03400 DNA repair and recombination proteins [BR:clup03400]
    CLUP02_03625
Enzymes [BR:clup01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CLUP02_03625
    6.5.1.6  DNA ligase (ATP or NAD+)
     CLUP02_03625
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     CLUP02_03625
DNA replication proteins [BR:clup03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    CLUP02_03625
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     CLUP02_03625
DNA repair and recombination proteins [BR:clup03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     CLUP02_03625
   NER (nucleotide excision repair)
    Other NER factors
     CLUP02_03625
   MMR (mismatch excision repair)
    Other MMR factors
     CLUP02_03625
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-GeneID: 73337655
NCBI-ProteinID: XP_049139788
UniProt: A0A9Q8SIU6
LinkDB
Position
2:join(4365314..4365582,4365720..4365874,4365937..4367092,4367145..4367913,4367984..4368520)
AA seq 961 aa
MLPGKFLWARAATGPFRVTRLELLTRFFCSKRVEVPQGPPTTFMSALPRLLNSSIGQRNV
LGSAFHTSFRLFTIYTRPAITMAPKQATLGKFFGAKGSKPEPQQSKLSFATKTAPKKEVK
KEVEEEVDADKDAAETRASPSKPRKRTRSPSPAVQASSPKVKNEIVEEDEDDEPATKRPR
RGRKRAIEDEDEDEVMDEAPSKSRSKSPKTSQARKNGTEKPVKAANASKTAQPKKSAKSP
TPVVEDDKEDATESASEDDVVEDDEEEAKPTAAKKKKALEKVQMKLKTQTKDPYPDWKAG
EPVPYAALCTTFSLIELTTKRLEIMAHCSLFLRQVLRLTPDDLLPTVLLMINKLAPDYAG
IELGIGESLIMKSIGESTGRSLAVIKQDQKEIGDLGLVAVKSRSTQPTMFKPKALTIQGV
HKGLMGIATVSGNGAQGRKVDAIKKLLSAADSHSSGKVDITKDKGGPSEAKYLVRFLEGK
LRLGLAERSVLVSLAQAVVFHEADAKGQVPKTTDVEQAEAVLKTVYSELPSYDVIIPAMV
EHGIMHLREHCKLKPGVPLKPMLAKPTKAITEVLDRFEDQTFTCEYKYDGERAQIHYVAK
SADEEISQSLPGATTAAANGVAAIFSRNSEDLSKKYPDILTKLHTWVKEDTKSFVLDCET
VAWDVDEKKVLPFQQLMTRKKKDVKIEDVKVKVCVFAFDLLYLNGEAIVEKSLRERRELL
LNAFAPVEGEFALATHMDGRELEQIQVFLDESVKASCEGLMVKMLDGSESGYEPSKRSRN
WLKIKKDYLSGIGDSLDLVVLGAYYGKGKRTSVYGAFLLACYNPSSDSYETVCNIGTGFS
EAVLEELHKQLSDIVIDRPKPFYAHSSGGQHQPDVWFEPRYVWEVKTADLTLSPRYKAGC
KEGVDPGGEKGISLRFPRFIKVRDDKKADEATSSRQVAEMYRKQESVTKSKGPAVDDDFE
Y
NT seq 2886 nt   +upstreamnt  +downstreamnt
atgctgcctggaaagtttctgtgggcccgtgcagctacgggtccttttcgcgtcaccagg
ctggagctcttaacgcgattcttctgctccaagcgcgtcgaggttccccagggtcctcct
acaaccttcatgtctgctcttccccgccttctgaacagttcaatcggtcaaagaaacgta
cttgggtcagcgtttcataccagctttcgactcttcactatctacactcgaccagccatc
acaatggcgccaaagcaggcgacgctgggaaagttcttcggagcgaaaggatccaagccc
gaaccccagcagagcaagctgagcttcgccaccaagacagccccgaagaaggaggttaag
aaggaggtcgaagaggaggtcgatgcagacaaagatgccgctgagacacgggcatctcct
agcaagccgcggaaacgtaccagaagcccgagtcccgccgtacaagcatcgagcccgaag
gtcaagaatgagattgtggaagaggatgaggacgatgagcctgccacaaagagaccgcgc
agaggccgcaaacgtgcaattgaggacgaggacgaagatgaagtgatggacgaagctcct
agcaagtcccgatcaaaatcaccaaagacctcccaggccagaaagaacggcacagagaag
cctgtaaaggccgcaaacgcatccaagactgcccaaccgaagaaaagcgccaagtctcct
acacctgtcgtggaggacgataaggaggatgcaacggagtctgcgtcagaagacgacgta
gttgaagacgacgaagaggaggccaagcctacggcagcgaagaagaagaaggccttggaa
aaggtgcagatgaaactgaagacccaaacaaaggacccatatcccgactggaaggcgggc
gaaccagttccctatgccgcgctctgtaccaccttttctctgatcgagctcacgaccaag
cggctcgagattatggcacactgttcgctattcctccgacaggttctgcgtctgaccccc
gacgatcttcttcccactgttctgctcatgatcaacaagctggctcctgactatgccggt
attgagctgggcattggtgagtcgctcatcatgaagtccattggtgaatccacgggacga
agcctcgcagtcatcaagcaagaccagaaggagattggagatctcggcctcgttgccgtc
aagagtagatcaacacagccaaccatgttcaagcccaaagctttgacgatacagggagtt
cacaagggtctcatgggcatcgccactgtttctggcaatggtgcccagggccgtaaggtt
gacgccatcaagaaattactatcagcagccgattcccattcctccggaaaggtggatatc
acgaaggacaaaggcggtcccagcgaagccaagtatcttgtccgattcctcgagggtaaa
cttcgattgggactggcagagaggtctgttctggtgtctttggctcaagctgtggtcttc
cacgaggccgacgccaaaggtcaggtacccaagacgacagacgtggaacaggctgaggcc
gttctcaagacggtctacagtgaacttccgagttacgatgtcatcatccccgccatggta
gaacacggcatcatgcatctgcgcgagcattgcaagctgaagcccggcgtgcccctgaag
ccaatgttggcaaaaccaacgaaagctatcactgaagttctggaccgcttcgaggaccag
accttcacatgtgaatacaagtacgacggcgaacgagcgcagatccattacgttgcgaaa
tctgcggacgaggagattagtcaatctttgccaggggctacgaccgctgcggcaaatggt
gttgctgccatcttttcccgtaactctgaagatctctccaaaaagtatcccgatatcctt
accaaattgcacacttgggtcaaggaggatacgaagagcttcgtccttgactgtgagaca
gtcgcgtgggatgttgacgagaagaaagtccttcctttccagcagctgatgacgcgaaag
aagaaggatgtcaaaatcgaagatgtcaaggtgaaggtctgcgtttttgctttcgatctc
ctttatctcaacggcgaggccattgttgagaagtcgctcagggagcgtcgcgagctcctg
ctgaatgcctttgcgccagtagagggtgaatttgcccttgctacgcatatggatggacgg
gagttggagcagatccaagtgttcctcgacgagagtgtcaaggcgtcttgcgaaggtctg
atggtgaagatgttagacggctcggagagcgggtatgagcccagcaagaggagccgaaac
tggctcaagatcaaaaaggattacttaagcggcatcggcgactcgcttgatctcgtagta
ttgggtgcatattacggcaaaggcaagcgtacatctgtctacggcgcctttctcttggcc
tgctacaacccgtcgtctgattcgtatgaaaccgtctgcaatatcggcacgggattctcc
gaggccgtcctcgaggaactgcacaagcagctctcggacattgtcattgaccggccaaag
ccgttttacgcacattcctcgggcgggcaacatcagcccgacgtgtggttcgagcctcgt
tacgtctgggaggtcaagacggccgatttgacgctcagcccgcgctacaaggccgggtgc
aaagaaggtgtcgaccccggcggtgaaaagggaatcagtctgcgattcccgcgcttcata
aaagtgcgcgacgacaagaaggccgacgaggccacgtccagtcgccaggtggctgagatg
tatcgcaagcaggagagcgtgaccaagagcaagggccctgcggtggatgatgatttcgag
tattaa

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