Colletotrichum lupini: CLUP02_03639
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Entry
CLUP02_03639 CDS
T08561
Name
(RefSeq) CAF1 family ribonuclease
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
clup
Colletotrichum lupini
Pathway
clup03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clup00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CLUP02_03639
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clup03019
]
CLUP02_03639
Messenger RNA biogenesis [BR:
clup03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
CLUP02_03639
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
CLUP02_03639
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RFX_DNA_binding
Motif
Other DBs
NCBI-GeneID:
73337668
NCBI-ProteinID:
XP_049139801
UniProt:
A0A9Q8SIY3
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All DBs
Position
2:complement(join(4403195..4404247,4404307..4404739,4404809..4405166,4405259..4405280))
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AA seq
621 aa
AA seq
DB search
MDSLVVVNHPSSSTVGQPEQAFGPHPHILSKSEITRRSPQRFSSARTQNDDQHHSASITR
RDDLSPLEIIALLVHSKRANPTISGEEQRCFCTANHLVPHSHLQTQMQGRGPSTTPQNPT
RPCPTTRFPGGPNTISPYHQQFPSHAQGHGPNHGPPLGANPSYINNAAQMNAFSSNGNVL
GGTPGLNGGFPLGADTGLGSHAARMGFAHAASLQQQQQHGQQQHNFGLDHGAAPARTTQN
KGRIREVWKHNLHEEMAVLRELVDKYPYIAMDTEFPGVVSRPMGSFRGKSDYHYQCLRTN
VDMLKVIQIGLTLFNEDGETPPARPNSQQDIELSAAQRRAASQGPFPYAWQFNFKFSVKD
DMYNEKSIESLSSAGIDFASLERDGIDPHEFASLLIPSGLVCFDNVKWISFHGGYDFGYL
TKLLTCNDLPNDESDFDQVMKLYFPSAYDVKHLMKHAIRLHNSGLLTPSDPSSADILQKF
EHKSGLENIADSLKIKRVGNAHQAGSDSLLTGKVFFQMRDKIFNGEIPEEHVGKVWGLGI
PELLVLERLPFGNNGGNQDSAQNQGPNGQHNGGPSTPNTGSVGLASTPAAQAHNTNGISM
GPMTPGGGGGVFGNFAFGGAR
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atggactctttggtggtggtcaaccacccctcgtcctccacggtcggtcaaccagagcaa
gccttcgggcctcatccacacattctgtccaaatccgagataaccagacgttctccccag
cgctttagctccgcacgaacccagaacgacgatcagcatcactcagcaagcatcactcga
cgcgacgacttatcccctctcgaaattatcgcccttctcgtacattcaaaacgagccaat
ccgaccatcagcggggaagaacaaaggtgcttctgtactgccaaccacctcgtccctcac
tcgcatctccagacgcaaatgcagggccgtggaccgtccacaacccctcagaacccaacg
cgaccttgcccgacgacacggttccctggcgggcccaataccatatcgccataccaccaa
cagttcccctcccacgcccaaggccacggcccgaatcatggaccccctctaggagcaaac
ccttcctacatcaacaacgccgctcagatgaacgccttctcttcgaacggaaacgtcctc
ggcggtactcccggtctgaacggtggcttccccctcggcgccgacaccggtctcggaagc
catgctgcgcggatgggttttgcgcacgcggccagcttgcagcaacagcagcagcacggg
cagcagcaacataattttgggctcgatcatggcgcggcgccggcgcggacgacgcagaac
aagggtagaataagggaggtgtggaaacacaaccttcacgaggagatggcggtactacgg
gagctcgtcgacaagtacccgtacattgctatggacacggaattcccaggcgtcgtgtca
cggccaatgggctctttcagaggaaagagtgactaccactaccaatgtctgcgcaccaac
gtcgacatgctcaaggtcatccagatcggactgacgcttttcaacgaggatggcgagacg
ccgccagcaagaccaaactcgcagcaagacattgagctgagtgctgctcaacggagagca
gcatcgcaagggccgttcccgtatgcatggcagttcaacttcaagttctccgttaaggac
gacatgtacaacgagaagtcgatcgaatcattatcgagtgccggaattgactttgcgtct
ctcgagagagacggcatcgaccctcacgaattcgcctcccttctcatcccatccggtctg
gtatgcttcgacaacgtgaagtggatctccttccacggaggctacgactttggctacctt
accaagctgctgacatgcaacgacctccccaacgacgaatcggattttgatcaagtcatg
aagctgtatttcccgtcggcctacgacgtcaagcacctgatgaagcacgccattcgactt
cacaactctgggctccttacccccagcgatcctagcagcgccgatatcctccagaagttt
gagcacaagtctggcctcgagaatatcgccgactccctcaagatcaagcgcgtgggcaat
gcgcaccaggccggctcggactctctgcttacgggcaaggtctttttccagatgcgcgac
aagatctttaatggggagattccagaagagcacgtgggcaaggtctggggcttgggtatt
ccggagctcctggtgttggagagattgccgttcggtaacaacggtggcaaccaagattcg
gcgcaaaatcagggccccaatggtcagcacaatggaggaccgagtacgcccaataccggt
agtgtcggtctcgcgagcacgcctgccgcgcaagcacacaacaccaatggcatctccatg
ggaccaatgaccccaggcgggggaggcggggtctttggcaactttgcctttgggggcgcc
agataa
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