Colletotrichum lupini: CLUP02_03747
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Entry
CLUP02_03747 CDS
T08561
Name
(RefSeq) WD domain-containing protein
KO
K15542
polyadenylation factor subunit 2
Organism
clup
Colletotrichum lupini
Pathway
clup03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
clup00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CLUP02_03747
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clup03019
]
CLUP02_03747
Messenger RNA biogenesis [BR:
clup03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
CLUP02_03747
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
WD40_Gbeta
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_2nd
ANAPC4_WD40
Beta-prop_IFT140_1st
Beta-prop_Aladin
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_EIPR1
WDR90_beta-prop_4th
Beta-prop_WDR19_1st
Beta-prop_RIG_2nd
Beta-prop_WDR41
WD40_RFWD3
Beta-prop_IFT122_1st
Beta-prop_SCAP
Beta-prop_DCAF4
Beta-prop_WDR35_TULP_N
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_ACSF4
PEP5_VPS11_N
Beta-prop_WDR11_2nd
Motif
Other DBs
NCBI-GeneID:
73337774
NCBI-ProteinID:
XP_049139907
UniProt:
A0A9Q8SJF5
LinkDB
All DBs
Position
2:join(4742474..4742582,4742757..4742872,4742934..4744629,4744869..4744904,4744957..4744967,4745026..4745196)
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AA seq
712 aa
AA seq
DB search
MAYDPRGDHHGRRGGGGGPGGDGEGQDGGFVRARGRRPVTDYGSTVANWMRHRSPLDGDA
YTGEVERPSASFIVDFIPPAARRTDPGDTIPVKHLHSSLNKIKHPVNVVRWTPEGRRLLT
ASSSGEFTLWNGTGFNFETIMQAHDSAIRALAYSHNDDWLISADHDGSVKYWQPNFNNLQ
SIAAHNDPVRDLAFSPNDSKFVTACDDSTLKIFDFAGGVEESTLKGHGWDAKSCDWHPTK
GLLVSGSKDHLVKLWDPRTGRCLTTLHGHKNTITKTLFEKVQGDCLATSARDQTARVFDL
RMMRDICLLKGHEKDISTIAWHPVHSNLLSTGGHDGSLYHYILDEPNTPAGHANSVAPYD
SSDPSTTPAQTIYPAHKVPFAHDFAIWSLDWHPLGHILASGSNDRITRFWSRKRPGDADV
FQDRYHVGEAAAEANGTWDRRGGRRQRQEEEEMEMEDEMDGLVDQKMPLKQPMVPGFPGL
PGLPGLPGLPGLSMPQNGGAGGPVPPPPMIPGVGGAGGAPPPPLPFPLPGLNGAPPPPMI
PGLPGGIDPSNPADLAKIAEMIQKAGGTLPPPPPGGFAPPPGMVPPPNFVPPPGFPPMPM
SMPPPPGANNNNHRDRDDGGRGGRRAPLPSQEESLKQEQRLTVLEELCTFGQCLSSLCVC
KYAMQPTSPLFLSLSLSILGRFPLPRYSNGTYVKAKDNYGEPTRPHAKSPPN
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atggcgtatgatcctcgaggggatcaccatggcaggagaggaggaggaggaggcccaggc
ggtgatggagagggtcaagatggcggtttcgtgagagccaggggtcgacgtcctgttact
gattatggctcaaccgtcgccaactggatgcgccatcgctcgccacttgacggcgatgca
tacaccggagaagtcgagaggccaagtgccagcttcatcgttgatttcataccacccgcc
gcgaggaggacagatcccggtgacacaatcccagtgaagcacctacactcatcactgaac
aagatcaagcacccggtcaacgtcgtcaggtggacgccagaaggacgccgcctgttgacc
gcgtcgagcagcggagagttcacattatggaacggtaccggattcaactttgagaccatt
atgcaggcccacgattccgccatcagagctctcgcctattctcacaacgacgactggctc
atctctgccgaccacgacggaagcgtcaagtactggcagcccaatttcaacaaccttcag
agcatcgccgcacataacgacccggtcagagacctcgcattcagccccaacgactccaaa
ttcgtcactgcatgcgacgactcgacgctcaaaatttttgattttgctggaggagtggag
gagtcgaccctcaagggccacggctgggacgccaagagctgcgactggcatccgacaaag
ggcttgttagtatcaggctcaaaagaccatctggtcaagctgtgggatcccaggacaggc
cggtgcctgaccaccctccacggccacaaaaacacaatcacaaagacgctgttcgaaaag
gtccagggcgactgcctggcaacgtcagcacgagaccagacggcccgcgtcttcgacctc
cgaatgatgcgcgacatctgcctgctcaagggccacgaaaaggacatttcgaccatcgcc
tggcacccagtccactccaacctcctcagcacaggcggccacgacggctccctgtaccac
tacatccttgacgagcccaacacgcccgccggtcacgcaaactccgtggccccctacgac
agctccgacccgtcgacgaccccggcgcagacgatatatcccgcccacaaggtccccttt
gcccacgactttgccatctggtctctcgactggcacccgctaggccacatcctcgcctcg
ggctcgaacgaccgcatcacgcgcttctggtctcgcaagcggcccggcgacgcagacgtc
ttccaggaccgctaccacgtcggtgaggccgccgccgaggccaacggcacatgggaccgc
cgcggcgggcgccgccagcgtcaggaggaggaggagatggagatggaagacgagatggac
ggcctcgtcgaccagaagatgcccctcaagcaacccatggtccctgggttcccaggcctc
cccggtcttcctggactaccgggcctaccgggcctctcgatgccgcagaacggcggcgca
ggcggtcccgtcccgccaccgccgatgatccccggcgtcggcggcgcaggtggcgcaccc
cctccgcccctacccttccccctgcccgggctaaacggtgcaccgccgccgccgatgatc
ccaggtctccccggcggcatcgacccgagcaacccagccgacctggccaagattgccgaa
atgatccaaaaggccggcggcaccttacctcccccgccaccaggtggcttcgcgccgccg
cccggcatggtgccgccgccgaatttcgtgccgccgcccgggttcccgcccatgcccatg
tccatgccgccgcctcccggcgcgaacaacaacaaccacagagaccgcgacgacggtggc
cgtggcggcaggcgggcgccgcttcctagtcaggaggagagtctgaagcaggagcagcga
ctcacggtactcgaggaactctgcacctttggacaatgcttgtctagtctctgtgtatgc
aagtatgcgatgcagccgacctctcctctgtttctgtctctctctctctctatcctcggt
cgcttcccccttccaaggtacagtaatggtacatatgtgaaagcaaaggacaactatgga
gagccaactcggcctcatgctaaatccccgccaaattga
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