Colletotrichum lupini: CLUP02_03994
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Entry
CLUP02_03994 CDS
T08561
Name
(RefSeq) DNA repair helicase rad25
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
clup
Colletotrichum lupini
Pathway
clup03022
Basal transcription factors
clup03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
clup00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
CLUP02_03994
09124 Replication and repair
03420 Nucleotide excision repair
CLUP02_03994
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
clup03021
]
CLUP02_03994
03400 DNA repair and recombination proteins [BR:
clup03400
]
CLUP02_03994
Enzymes [BR:
clup01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CLUP02_03994
Transcription machinery [BR:
clup03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
CLUP02_03994
DNA repair and recombination proteins [BR:
clup03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
CLUP02_03994
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
SNF2-rel_dom
DEAD
AAA_34
Motif
Other DBs
NCBI-GeneID:
73338021
NCBI-ProteinID:
XP_049140154
LinkDB
All DBs
Position
2:complement(5532267..5534735)
Genome browser
AA seq
822 aa
AA seq
DB search
MPPKRKAQGAATGSFKAGKGSVASTPGGATPRSIASDNESVADPVSESEDENLEKNVDKF
SVEAYLDRPKTNGHESMTGLFKKKRDFSFLQLKPDYQNRPLWIDPAKGRIFLESFNPLAE
QAQDFLITIAEPISRPSFVHEYALTTHSLYAAVSVGLSPQDIINTLDRFLKMPLPDSIRK
FIEGCTQSFGKVKLVLKNTKYFVESTDPVILQKLLKDSVIGPLRVHGTEEITTIAAPKQG
PLVIPGTANAAGVRQAEEQKAKGREGEVKEGEVYAALNDDDDDDQEITHAFEIGDEAVET
VQKRCLELEYPVLEEYDFRRDEANPNLEIDLRPGTLIRPYQEKSLSKMFGNGRAKSGLIV
LPCGAGKTLVGITAACTVKKGVIVLCTSSMSVVQWRNEFLKWSNIKPEDIEAFTSDNKGR
IFPGNTGIIVTTYSMVTQTRERSHEAKKMMDFLQTREWGLMLLDEVHVVPANIFRKVTSS
IKTHSKLGLTATLLREDDKISDLNFLIGPKLYEANWMELSEQGHIAKVQCAEVWCPMTTE
FYDEYLKASARKRALLYIMNPRKFQAAQYLINYHESRGDKIIVFSDNVYALKTYAEKLEK
AYIFGGTGQAERMNILQNFQHNPQVNTLFLSKIGDTSLDLPEATCLIQISSHYGSRRQEA
QRLGRILRAKRRNDEGFNAFFYSLVSKDTQEMYYSSKRQAFLVDQGYAFKVITQLANIEK
TPGLAYAAASERRELLQKVLIENEAGGEDEVIDDLFHSGTMGRAPARGRKKAAARRTAGL
LGDLSGGQDMAYMEQNKRVKLKKAKGESSAFFKKIQREKAKR
NT seq
2469 nt
NT seq
+upstream
nt +downstream
nt
atgccaccgaagaggaaggctcaaggggccgccaccggcagcttcaaggcaggtaagggc
tctgtagcttcaacacctgggggcgccacccccaggagtatcgccagcgataatgaatcg
gtagcggatcccgtgagcgagtcggaagacgagaatctcgagaagaacgtcgacaagttc
tccgtcgaggcgtacctggacaggcccaagacgaacggccatgaatccatgactggacta
ttcaagaagaagcgcgacttctccttcctccagctgaaacccgattatcagaatcgcccg
ctctggatcgaccctgccaaaggccgtattttcctcgaaagcttcaacccgctggccgag
caagcacaggacttcctcatcaccattgccgaaccaatttcccggccgtccttcgttcac
gaatatgcgctcacgacacacagcttgtacgctgcggtctctgtgggcttgtcaccccag
gatatcatcaacactctcgatcggtttctgaagatgcctttgcccgacagcattcgcaag
ttcatcgagggctgcacgcaaagtttcggcaaagtcaagctggtgcttaaaaatacgaaa
tactttgtcgagagtacggatccggtcatcctgcagaagctgctgaaagactccgtcatc
ggaccgctgcgagtacacggtacggaggagattaccacaatagcggctccgaaacagggc
cctctggtcattccaggcactgccaatgctgctggtgtgcgacaggcagaagaacaaaag
gccaagggacgcgagggtgaggtgaaggagggcgaggtctacgcggcactgaacgatgac
gacgatgacgatcaggagatcacgcatgcctttgagatcggggacgaggcagtcgagacc
gttcagaagaggtgtcttgaactggagtatccggtgttggaggagtacgatttccgacga
gatgaggccaacccgaacctggagatcgacttgcgcccgggcaccttgattcgaccctac
caagaaaagagtttgagcaagatgtttggtaatggacgagccaagagcggtctgatcgtc
cttccttgcggtgctggaaaaacgcttgtcggtatcaccgcggcttgcaccgtcaagaag
ggcgtcatcgtcctctgcaccagttccatgtctgtcgtgcaatggcgaaacgaattcctc
aagtggtccaacattaagccagaggatatcgaagcattcacgtcagacaacaagggcaga
atcttcccgggtaacaccggtatcattgtgaccacatactccatggtgacgcaaaccagg
gagcgttctcacgaggccaagaagatgatggactttttgcagacgcgagaatggggtctg
atgcttctggacgaggtccacgttgtccccgccaatatcttcagaaaggtcacctcgtcc
atcaagacgcattcgaagcttggcttgaccgccacactgcttcgtgaagatgacaagatc
tcagatctgaactttttgattggccccaagttatacgaggcgaactggatggaactcagc
gaacaaggccacattgccaaggttcaatgcgctgaggtctggtgccccatgactacggaa
ttctacgatgagtacttgaaggcgtcggccagaaaacgcgcgctgctgtacatcatgaac
ccgagaaagttccaagccgctcagtacctcatcaactaccacgagtctcgaggcgacaag
atcattgtcttttcggacaacgtctacgctttgaagacttatgctgagaagctggagaag
gcttacattttcggcggcactgggcaggcagagcgcatgaacattctgcaaaacttccag
cataaccctcaagtcaacacattattcttgtcaaagattggtgacacatccctcgatctt
cccgaggctacctgtctcattcagatctcgtcacattacggttctcgtcgtcaagaggcg
cagcgactcggccgtatcttgcgagccaagaggagaaacgacgagggtttcaatgccttc
ttctattccctggtgtcgaaggatacccaggagatgtactactcctccaagagacaggcg
ttcctggtcgaccagggctacgccttcaaggtcatcacgcagctcgccaacatcgagaag
acacctggcctagcctacgccgcggcgagcgagagacgagagctcttgcaaaaggtcctc
atcgagaacgaggccggcggcgaagacgaggtcattgacgacctgttccacagcggcacg
atgggccgcgcgccggccaggggcaggaagaaggccgccgcgaggaggacggctggtctg
ctgggcgacctgtcgggtggacaggacatggcctacatggagcaaaacaagagggtcaag
ctcaagaaggcaaagggagagagcagtgccttcttcaagaagatccagagagagaaggcc
aagcgatag
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