KEGG   Colletotrichum lupini: CLUP02_05180
Entry
CLUP02_05180      CDS       T08561                                 
Name
(RefSeq) DNA directed RNA polymerase
  KO
K03009  DNA-directed RNA polymerases I, II, and III subunit RPABC4
Organism
clup  Colletotrichum lupini
Pathway
clup03020  RNA polymerase
clup03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:clup00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CLUP02_05180
  09124 Replication and repair
   03420 Nucleotide excision repair
    CLUP02_05180
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:clup03021]
    CLUP02_05180
   03400 DNA repair and recombination proteins [BR:clup03400]
    CLUP02_05180
Transcription machinery [BR:clup03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     CLUP02_05180
  RNA polymerase III system
   RNA polymerase III
     CLUP02_05180
  RNA polymerase I system
   RNA polymerase I
     CLUP02_05180
DNA repair and recombination proteins [BR:clup03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      CLUP02_05180
SSDB
Motif
Pfam: DNA_RNApol_7kD GATA Zn-ribbon_8 DUF5816 HypA FYDLN_acid TF_Zn_Ribbon
Other DBs
NCBI-GeneID: 73339199
NCBI-ProteinID: XP_049141332
LinkDB
Position
3:complement(join(1516575..1516599,1516674..1516876))
AA seq 75 aa
MSREAYQVPTAGAASAPSAAAYQSYGSEGPQMQYLCGDCGLKFQLRRADPIRCKECGCRI
LYKERTKRMVQFEAR
NT seq 228 nt   +upstreamnt  +downstreamnt
atgtcccgcgaagcctaccaagtccccaccgctggcgccgcctccgcgcccagcgccgcc
gcctatcagtcttacggctccgagggcccccagatgcaatatctctgcggcgattgcggt
ctcaagttccagctgcgtcgcgccgatcccatcagatgcaaggagtgcggttgtcgtatt
ctttacaaggaacggaccaagagaatggttcagttcgaggcgagatga

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