KEGG T08561: CLUP02

Colletotrichum lupini: CLUP02_05302

Entry

CLUP02_05302      CDS       T08561

Name

(RefSeq) U6 snRNA-associated Sm-like protein LSm2

K12621

U6 snRNA-associated Sm-like protein LSm2

Organism

clup Colletotrichum lupini

Pathway

clup03018

RNA degradation

clup03040

Spliceosome

Brite

KEGG Orthology (KO) [BR:clup00001]
09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CLUP02_05302
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CLUP02_05302
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:clup03019]
    CLUP02_05302
   03041 Spliceosome [BR:clup03041]
    CLUP02_05302
Messenger RNA biogenesis [BR:clup03019]
Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     CLUP02_05302
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     CLUP02_05302
Spliceosome [BR:clup03041]
Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    CLUP02_05302
Complex C
  U2 snRNP components
    CLUP02_05302

SSDB

Motif

Pfam:

LSM SM-ATX Hfq

Other DBs

NCBI-GeneID:

73339320

NCBI-ProteinID:

XP_049141453

UniProt:

A0A9Q8WEH9

LinkDB

Position

3:complement(join(1877067..1877098,1877161..1877263,1877362..1877531,1877617..1877725,1877785..1877882,1877941..1878013))

AA seq 194 aa
MTVTLEDAKSWIRKRTEKQINRYEVLPLNGLADSVASCHHRTGSSGSRQPQGLSHITYES
PHTSSHSIKSITTLLSGASHLSIQFNRPPCSSSVTDVTPTSFFKTLIDHEVTVELKNDIQ
IRGILKSVDQYLNIKLEEISVVEELKYPHLSSVKNVFIRGSVVRYVHLPAGSVDVPLLED
ATRREAAAQAAKAK

NT seq 585 nt +upstreamnt +downstreamnt
atgacagtgactctagaagatgccaagtcttggatcagaaagagaacagaaaaacagatt
aatcgatatgaagttcttcccctgaacggactggccgattcagtggccagttgccaccac
agaactggctctagcggaagccgtcagccacaagggctaagccacatcacatacgaaagc
ccccacacctcttcgcactcaatcaagagcatcacgaccttactgagcggcgcatcacac
ctcagcatccagttcaaccgcccaccatgctcttcttcagtcactgacgttacgcccact
agtttcttcaagacgctcatcgaccacgaggtcaccgtcgagctcaagaacgacatccag
atccgcggcatcctcaagagcgtcgatcagtacctcaacatcaagttggaagaaatctct
gtcgtcgaggagctcaagtacccgcatctgagctctgtcaagaatgtcttcatccgcggc
tctgtcgttcgttatgttcacttgcccgctggctcagtagacgtaccccttctggaggac
gcgacgcgcagagaggctgctgcccaggccgcaaaggcgaaatag

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