Colletotrichum lupini: CLUP02_05360
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Entry
CLUP02_05360 CDS
T08561
Name
(RefSeq) WD domain-containing protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
clup
Colletotrichum lupini
Pathway
clup03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
clup00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CLUP02_05360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
clup03041
]
CLUP02_05360
Spliceosome [BR:
clup03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
CLUP02_05360
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
WDR55
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
PRP4
Beta-prop_HPS5
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
WDR90_beta-prop_4th
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
Beta-prop_WDR75_1st
Beta-prop_SCAP
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_RIG_1st
WDR54
Beta-prop_IFT140_1st
WD40_RFWD3
Beta-prop_WDR35_TULP_N
Beta-prop_Vps41
Beta-prop_SPT8
Nbas_N
Beta-prop_DCAF4
Beta-prop_DCAF12
Motif
Other DBs
NCBI-GeneID:
73339377
NCBI-ProteinID:
XP_049141510
UniProt:
A0A9Q8SM15
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Position
3:2112288..2113853
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AA seq
521 aa
AA seq
DB search
MMHPSRQAYVEEAMDEDRGIALEDVPVDHDYEIPSAFAGAAPEKTSAVLAQMERKKLAAS
IAVPTDDNRVRTRLREMGEPITLFGEGKPERRDRLRNLLVTQLLANQQEMDGIENGDITM
EDAEDEDEDEQDEEFYTPGGQALLQARIDIAKYSLPRARRRVQFQKAESTIPLRTHVKFR
KQIKEKLDGFELQGSQTAGERHVSMTRLSPNGELVAVGNWGGALKLIEIPSMETQMNLRG
HTQKISGISWYPGSTLPEANVSPDTVNLASGGAEGLVHLWSLNKDTPLSTLTGHGGRVSR
VEFHPSGRYLASASDDTTWRLWDVETTAELLLQEGHSRGVYAVSFNADGSLLASAGLDSI
GRIWDLRSGRTVMILDEHIQPIYALDWGSDGHRVLSGSADGWVKCWDVRKVQRTANLGAH
AKAVSDVRWFRGLDDPIDGHPPGPDEKGAQQPKKAGTFFVSGGFDAKIKIFSADNWGLVQ
TLSGHSGPVASVDVSRDGKWIVSGGHDRTVKLWGRNDGEGV
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atgatgcacccttcacgacaagcctacgtcgaggaggcaatggacgaggatcgaggtatc
gcgctggaggacgtccccgtcgaccacgactacgagattccctccgcatttgccggcgcc
gcgcctgagaagacgtcggccgtcctggcgcagatggagaggaagaagctggcggcgagt
atcgcggtgcccacagacgacaaccgggtgcgcacaaggctcagagagatgggcgagccg
atcacgctctttggcgagggcaagcccgaacgcagagaccgcctccggaacctgctggtt
acccagctgctggccaaccagcaggagatggatggcatcgagaacggcgacatcacaatg
gaggacgccgaggatgaggacgaggacgagcaggacgaggagttttacacacccggcggc
caggccctgctgcaggcacgcatcgatatcgcaaagtactccctgccgagggcgcggcgg
cgggtgcagtttcaaaaggccgagtctacgatcccgttgcgtacacacgtcaagttccgg
aaacagatcaaggagaagctggatggcttcgagctccagggcagtcagacggccggcgag
agacacgtcagcatgacgagattatcgccaaacggagagctcgttgccgtggggaactgg
ggcggagcgctcaagctcattgagatcccgagcatggagacccagatgaatctccgagga
cacacacaaaagattagcggtatctcatggtacccggggtccacgctacccgaggccaac
gtgtcacccgataccgtgaacctcgcttccggcggagctgagggcttggtccacctgtgg
tctctgaacaaagatacccccctttcgaccctgacgggccacggcggcagggtatcccgc
gtcgagttccacccttccggccgatatctggcatcggcctcagacgacacgacgtggagg
ctctgggacgtggaaacgacggcggagctactgctgcaagagggccattccaggggcgtc
tacgccgtcagcttcaacgccgacggctccctcctggccagcgcgggcctggacagcatc
ggccgcatctgggatctgcggtccggcaggacggtcatgattctcgacgagcacatccag
cccatctacgcgctcgactggggttccgacggccacagggtgctgtcgggttcggccgac
ggctgggtaaagtgctgggacgtgcgcaaggtgcagcggacggcgaacctcggcgcgcac
gccaaggccgtctcggacgtgcggtggtttcggggcctggacgacccgatcgacggccac
ccgcccggccccgacgaaaagggcgcgcagcagcccaagaaggcgggcacgtttttcgtc
tctggcgggttcgacgcaaagattaaaatcttctcggccgacaactgggggttggtgcag
acgctcagcgggcactccgggccggttgccagtgtcgatgttagcagggacggcaagtgg
attgtcagcggtggccacgaccggacggtcaagctctggggccggaatgatggcgaggga
gtctaa
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