Colletotrichum lupini: CLUP02_05584
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Entry
CLUP02_05584 CDS
T08561
Name
(RefSeq) RNA binding protein
KO
K12881
THO complex subunit 4
Organism
clup
Colletotrichum lupini
Pathway
clup03013
Nucleocytoplasmic transport
clup03015
mRNA surveillance pathway
clup03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
clup00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CLUP02_05584
09122 Translation
03013 Nucleocytoplasmic transport
CLUP02_05584
03015 mRNA surveillance pathway
CLUP02_05584
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clup03019
]
CLUP02_05584
03041 Spliceosome [BR:
clup03041
]
CLUP02_05584
Messenger RNA biogenesis [BR:
clup03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
CLUP02_05584
TREX complex
CLUP02_05584
Spliceosome [BR:
clup03041
]
Complex C
Other components
EJC/TREX
CLUP02_05584
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
CLUP02_05584
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
Motif
Other DBs
NCBI-GeneID:
73339600
NCBI-ProteinID:
XP_049141733
UniProt:
A0A9Q8SPB1
LinkDB
All DBs
Position
3:join(2750978..2751045,2751086..2751184,2751241..2751298,2751360..2751448,2751476..2751507,2751552..2751615,2751663..2751729,2751783..2751930,2751988..2752514)
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AA seq
383 aa
AA seq
DB search
MADKLDRSLDEILGEKVRKPAALRATALATTVETVEVPPEDANANARNILATALERLNDP
PPSSSRSTTTTAQLSLTGVAVLRYSPSVTSLETSIGISTQNELPSEWVHDRFEEHAEQTI
AVRRPLDGDATSLSKGKDSSSSKIRVENIHYELTPDDLEELFNRIGPVAKLDLKYDRAGR
SEGVAFVTMESREDALDAIKQFDGANANGQPIKLSIIGGGAGGRSRNPFDSAVMPGRPLA
ERISAPGGRSRSMSPGRRYDVDEAAERGIDRYVPGSRGNRSRSPMPRRRGNGGGGGGRRP
GARREGGRDGGRDGGRDGGRDQEGGRGGRSGRDGRTRKTQEELDAEMADYFGGGNSGEAA
PQPNGGAAAAAVPATNDDIDMIE
NT seq
1152 nt
NT seq
+upstream
nt +downstream
nt
atggcggacaagctggaccgcagccttgacgagatccttggcgagaaggtaaggaaaccc
gcagccttaagagcgacggccctcgcaacaaccgtggaaacggtagaggtgccccccgaa
gacgcgaacgcgaacgccaggaatatcctcgcgacggcgttagaaaggttgaatgaccct
cctccctcctcatcccggtcgaccacgactaccgcgcagctttcgctaacaggtgtcgcc
gtcctgcgatacagtccttccgtgacgagcctagaaacctcgataggtatttccacgcag
aatgaactcccaagtgaatgggttcacgatcgattcgaagagcacgcggagcagacaatc
gccgtgcgccggcccctcgacggagacgcgacgagcctgagcaaaggcaaagattcgagc
agctcgaaaatccgcgtcgagaacatccactacgagttgactcctgacgacttggaagaa
ttgtttaacagaatcggccctgtcgcgaagttggatctcaagtatgatcgcgctggtcgc
tcggagggcgttgccttcgtcacgatggagtcccgcgaggatgctttggacgcgatcaag
cagtttgacggtgctaatgctaacggccaacccatcaaactgtcaatcattggcggtgga
gccggcggtcgatctcgcaacccctttgactcggcggtgatgccgggccgtccacttgca
gagcgaatctctgctcccggcggtcgctcgagatccatgtcccctggacgaagatacgat
gtcgacgaggctgctgagagaggcattgacagatacgtccccggaagccgtggaaaccgt
tcgcgaagccctatgccccgccggcgcggaaacggtggcggtggtggcggacgcagacct
ggagctcgcagagaaggcggtagagatggtggcagagacggtggtagagatggcggcaga
gaccaagaaggtggaagaggtggccgctcgggtagagacgggcgtactcggaagacacag
gaggaactggatgccgagatggctgactactttggcggaggcaactccggagaggctgcg
cctcagccgaacggtggcgctgccgctgccgcggtccccgccacgaacgatgatatcgat
atgatcgagtaa
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