KEGG   Colletotrichum lupini: CLUP02_05921
Entry
CLUP02_05921      CDS       T08561                                 
Name
(RefSeq) LSM domain-containing protein
  KO
K12627  U6 snRNA-associated Sm-like protein LSm8
Organism
clup  Colletotrichum lupini
Pathway
clup03018  RNA degradation
clup03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:clup00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CLUP02_05921
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CLUP02_05921
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:clup03019]
    CLUP02_05921
   03041 Spliceosome [BR:clup03041]
    CLUP02_05921
Messenger RNA biogenesis [BR:clup03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     CLUP02_05921
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     CLUP02_05921
Spliceosome [BR:clup03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    CLUP02_05921
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 73339936
NCBI-ProteinID: XP_049142069
LinkDB
Position
3:complement(join(3815672..3816027,3816102..3816129))
AA seq 127 aa
MATLGGYLNKKVLIVTSDSRILVGTLEAADQSTNLVIPLPLPSSQLSLESSELRLANTHL
APQVLSSAQERVIQTPESGEPSVEVPLGLYLVRGDNVCTIGLVDEALDESIDWTQVKGSA
IGGTKHV
NT seq 384 nt   +upstreamnt  +downstreamnt
atggcaaccctcggaggctacctcaacaagaaagtcctcattgtgacgtcggactcacga
atcttggtgggcacattggaagctgcggaccagtccacgaacctcgtaataccccttccc
ctcccctcttcacaactctctctcgagtcttctgagctgcgcctagctaacacacatctt
gcgccccaggtcctcagcagtgcccaagagcgagtcatccaaacccccgagagtggcgaa
ccctctgtcgaagtgcccctcggcctctatctcgtccgaggcgacaatgtctgcacgatc
ggcctggtagacgaggcgctagacgagagcattgactggacccaagtcaagggttctgct
attggaggaaccaagcacgtatga

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