Colletotrichum lupini: CLUP02_06147
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Entry
CLUP02_06147 CDS
T08561
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA2
KO
K03002
DNA-directed RNA polymerase I subunit RPA2 [EC:
2.7.7.6
]
Organism
clup
Colletotrichum lupini
Pathway
clup03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
clup00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CLUP02_06147
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
clup03021
]
CLUP02_06147
Enzymes [BR:
clup01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CLUP02_06147
Transcription machinery [BR:
clup03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
CLUP02_06147
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpa2_4
RNA_pol_Rpb2_7
DUF7479
Motif
Other DBs
NCBI-GeneID:
73340160
NCBI-ProteinID:
XP_049142293
UniProt:
A0A9Q8WEE1
LinkDB
All DBs
Position
3:complement(join(4606742..4609951,4610013..4610508,4610572..4610579))
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AA seq
1237 aa
AA seq
DB search
MTYRRQANERANMAPSATSTEWDHQYNTVRRENLFRNPPKDHTAYPALQEAVSPHIDSFN
ALFTSDDKSLLARGIEDIGTKTYLDGDDRAGLEGMNRLSVRIKSVALQKSQLPPSNKFAR
NREILPSECRERHSTYRGRLSATFEYRVNGGDPKEFVRELGQVPIMVKSNRCHLEGNSPA
QLVQRKEESEELGGYFIVNGIEKIIRLLQVNRRNFPMAINRPSFQNRGQGYTPYGIIVRS
VRPDETSQTNVLHYLSDGNMTFRFSWKKNEYLVPVMMVLKALVDTNDRDIFEGLIGLSNT
KSAKNSFLTDRVELLLRTYKSYGLYSKTETRAYLGEKFRVVMGVPDTMSNYDVGTEFLRK
VVLVHLGNINVTEKQDNDKFKMLLFMIRKLYALVAGDCAVDNPDAVQNQEVLLGGFLYGM
IIKERLEEFLSTAVRLSLREWTRKHPATPFTSQDFAKEFPANIFRHANENLGNGLEYFLS
TGNLTSPSGLDLQQTAGFTVVAEKLNFLRFISHFRMIHRGAFFAELKTTTVRKLLPESWG
FLCPVHTPDGSPCGLLNHLAHKCKIMTESVDASKIPGLVAELGAVETSSAATDESVVIML
DGKLIGFCTPRESLRIADTLRFWKVEGTHGVPLQLEIGYVPPSNGGSYPGIYLSSAPARM
VRPVKYLPLDKVDFVGPYEQPYMSIAVVENEIVSGESTHVEETPTNMLSILANMTPFSDF
NQSPRNMYQCQMGKQTMGTSATALRHRTDNKMYRIQSGQTPVVRSPLHNAYGFDNFPNGF
NAVVAVISYTGYDMDDAMILNKSAHERGFGHGTIYKTKKVTLKEEQRTRATKNITKLFGF
APGGFVKGFYRGLLDEDGLPYVGRMVQEGDVLCAWHTVSADYSGKLINLDGQTHYEKYKE
SETAFVEELRVLGSESGNEPAQTISIKLRVPRSPVIGDKFSSRHGQKGVASQKWPAVDMP
FSESGIQPDIIINPHAFPSRMTIGMFVESLAGKAGALHGLAQDCTPFKFNEENTAGDYFG
HQLMKAGYNYHGNEPMYSGITGEELAADIYVGVVYYQRLRHMVNDKYQVRTTGPVVPTTG
QPIKGRKRGGGIRVGEMERDALLAHGTAFLLQDRLLNCSDYTRSWICRSCGSFLSVQPTV
SPFVGKKKQVTTVRCRNCATRLDAGDAESAAKVEGEIWEDGQGNQWVGGENTTVVVVPGA
LKFLDVELAAMGVKLKYRIDSKDAPRKGPLKPMKSLP
NT seq
3714 nt
NT seq
+upstream
nt +downstream
nt
atgacatatcgcaggcaagcgaacgagagagcgaacatggcgccatcagcgacaagcacc
gagtgggatcaccaatacaataccgttcgtcgcgagaacctttttcgcaaccccccgaag
gatcacacggcctatcctgccctgcaagaggctgtgagccctcacatcgactccttcaat
gccttgttcacaagtgacgacaagagcctcctcgctcgaggcatagaggatattggcaca
aagacgtatcttgatggcgacgacagggcgggcctcgaaggcatgaaccgcctgtccgta
cggatcaagagtgtagcgctgcaaaagtcccagctacccccctccaacaagttcgccagg
aatcgtgaaatcctgccctccgaatgcagagagcgtcattcgacgtaccgaggcaggcta
tccgccaccttcgagtacagggtcaatggtggtgatccgaaagaatttgtgcgcgagctt
ggacaggtgccaattatggtcaagtccaacagatgtcacttggagggcaactctccggct
cagttggtgcaaagaaaggaggaatccgaagaactgggcggttacttcatcgtaaacggt
atcgagaagattattcgactgctgcaagtcaaccgaaggaatttccccatggcgatcaac
cgaccgagtttccaaaaccgaggccaaggctacaccccgtatggtatcatcgtccggtcc
gtcagaccagatgagacatctcagaccaacgttttgcactacctgagtgacggaaacatg
acgttccgcttctcctggaagaagaatgagtaccttgtaccggtcatgatggttcttaag
gctctcgtcgacacaaacgatcgcgacatcttcgaaggactgattggtctctccaacacg
aagtcggccaagaacagtttcttgacggaccgtgtcgagctgctgctccgaacctacaag
tcatacggactctacagcaagaccgagacgagagcctacctgggagagaagttccgcgtg
gtgatgggtgtacccgacaccatgtccaactacgatgtcggcaccgagttcctgcgcaag
gttgttcttgttcaccttggtaacatcaacgtcaccgagaagcaggacaatgataagttc
aagatgctgttgttcatgatcagaaagctgtatgctctcgtggcaggcgactgcgccgtc
gacaaccctgatgctgtccaaaaccaggaggtccttcttggcggtttcctgtacggcatg
atcatcaaggagcgccttgaagagttcctgtcgactgctgtcagattgtctctccgcgaa
tggaccagaaagcacccggccacccccttcacatcgcaggacttcgccaaggagttccct
gccaatatcttcagacacgccaatgagaaccttggaaacggcctggaatatttcctttcc
acaggtaatctgaccagtccttctggtcttgatttgcagcagacagccggtttcacagtt
gttgcggaaaagctcaactttctccgtttcatcagtcacttccgaatgattcacagaggt
gccttcttcgccgagttgaagacgacaacggtccgaaagctgttgcccgagtcttggggt
tttctgtgccccgtacacactcctgatggttcgccttgcggtttgcttaaccatctggct
cacaagtgtaagatcatgaccgagtccgtcgacgcctccaagatccctggccttgtggcg
gagttgggagctgtggagacgtcttctgcggctacagatgaaagcgttgtcatcatgctt
gatggcaagctcatcggcttctgcacacctcgcgaatctctcagaattgcagacactctc
cgtttctggaaggtggagggcactcacggcgttcctctccaactggaaattggatacgtc
ccgccttcaaacggcggttcataccctggtatctacttgtcttctgcgcctgcgcgtatg
gtcagacccgtgaagtatcttcctcttgataaggtggactttgtggggccttacgagcaa
ccctacatgtctatcgccgttgttgagaacgaaatcgtgtcaggcgagtcgacgcacgtg
gaagaaactcctaccaacatgctctccattcttgccaacatgacgcccttctcagacttc
aaccagtcccccagaaacatgtaccaatgtcagatgggtaagcaaaccatgggaacatcg
gcaacggctcttcggcaccgcacggacaacaagatgtacagaattcagagtggccagaca
ccggtggtacgatcgcctctacacaacgcttatggattcgacaacttccccaacggcttc
aacgccgttgtagcggttatctcatacactggctacgacatggacgacgccatgattttg
aacaagtcggcacacgaaagaggattcggacacggtaccatctacaagacgaagaaggtc
acgctgaaggaagaacagagaacgcgagccaccaagaatatcaccaagctcttcggtttc
gcccctggcggttttgtcaagggattctatcgtggcttgcttgatgaggacggattgccc
tacgttggacgcatggtccaagaaggagatgtactctgcgcatggcacacggtgtcagca
gactacagcggcaagctgatcaacctggacggacagacacactatgaaaagtacaaggag
tctgagactgcatttgtcgaggaattacgtgtgctcggtagcgagtcgggtaatgagcct
gcacagacgatctccatcaagctcagagttccccgatccccggtcatcggtgacaagttc
tcttctcgccacggacagaagggtgtcgcttcccagaaatggcctgctgtcgatatgcct
ttctcagaatctggtattcaacccgatattatcatcaaccctcacgctttcccttctcgt
atgacaatcggtatgttcgtcgagtcactggctggaaaggctggcgcgctccacggattg
gcacaagactgcacgcccttcaagttcaacgaggagaacaccgccggtgactactttggt
catcagctgatgaaggccgggtacaattaccatggcaacgagcccatgtactctggtatc
acgggagaggaactggccgccgacatttacgttggtgtcgtctactaccagcgtctgcgt
cacatggtcaacgacaagtaccaagtgagaacgacgggaccagtcgtaccgacaaccggc
cagcccatcaagggtagaaagcgtggtggtggtattcgtgtgggagagatggagcgtgac
gcgctgctcgctcacggtacggccttcctgctgcaggatcgtctgctcaactgttccgat
tacacgcgatcctggatctgccgaagctgtggttcgttcctctcagttcaaccaaccgtg
tcaccttttgtgggtaagaagaagcaagtcacgacagtgcgttgcagaaactgcgcaacc
cgcctcgacgccggcgacgcggagagcgccgccaaggtagagggagagatctgggaggat
ggccagggcaaccagtgggtcggaggcgagaacacgacggttgtcgttgttccgggtgcg
ctcaagttcctagacgtggagttggcagctatgggtgtcaagctgaagtaccgcatcgac
tccaaggatgcgcctcgcaagggccctttgaagcccatgaaatcattaccttag
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