Colletotrichum lupini: CLUP02_06364
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Entry
CLUP02_06364 CDS
T08561
Name
(RefSeq) mRNA 3'-end-processing protein RNA14
KO
K14408
cleavage stimulation factor subunit 3
Organism
clup
Colletotrichum lupini
Pathway
clup03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
clup00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CLUP02_06364
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clup03019
]
CLUP02_06364
Messenger RNA biogenesis [BR:
clup03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
CLUP02_06364
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
TPR_14
HAT_PRP39_C
TPR_16
UTP6_C
HAT_Syf1_CNRKL1_C
TPR_19
TPR_9
DUF4054
Motif
Other DBs
NCBI-GeneID:
73340374
NCBI-ProteinID:
XP_049142507
UniProt:
A0A9Q8SNZ8
LinkDB
All DBs
Position
3:complement(join(5378311..5379314,5379367..5380381,5380431..5380862,5380916..5381657,5382235..5382242))
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AA seq
1066 aa
AA seq
DB search
MPTFFGAPIIAMDPEVPQNDQQFEGASWGEDGYEETNDIQHSDEQSQDPAFPLEQAANGD
SEDAGEYDPESVAITSVPETAEPNPPAESTPTPTASTSIKSKSGKPKTQGGFLVGDSDDE
EEDAPTPASNAVPAVPATQTPIAQNPPFPSASTPVQGQVSATPEQASQGVPVRAPSAASS
TAQAPPPPAVQSVSSRDPNDTFGILEDRVQEDPRGDMDAWLALFAEHRRYDQLDELRAAY
ERFLQVFPQAADIWADWAQLELDSNRFQDAEALFSRSLVNVPNVKLWTVYLNYIRRRYDL
NNDPNGESRRILSMSYDFVIASVGIDRDSGQLWKDYIQFIKSGPGQVGGSGWQDQQKMDQ
LRKAYHRAITVPMFALTDLWKDYDQFEMSLNKTTGRQFIQKRSPAYMTAKAANSQLDRLI
PRLSRTSLPRLPPAPGFHGDQEFMEQVDIWKKWIQWEKEDPLVLLDEEPEAYKTRVLYCY
RQALMALRFWPEMWVDAAEWCFANNIAKDGKELGLSFLTDGIEANPESVLLALRHGDRVE
TTYPAGDDDASKAARAKAIREPYSLVLDTLYAMSKKLKEREEKEVRKIEEASAQDPNIKD
SIERNDDDIDGDNQPGELGREERINAVKQGFSVQTDMLKRTISFVWIALCRAARRTQGKG
NTTSGLRQVFIEARGRGQLTSDVYIAVAKMEALIYNDPAGGKIFDRGAKLFPEDASFMLE
YLKFLHSKGDTTNARVVFETCVNRLTQKEDRKDQAKQLYSYFHKYESQFGELSSIAELEK
RMSELWPADPRLSHFANRFSVDTFDPIAYRLIISPAVQLRPKMLIPTIEQPTSVRQSPMA
LPVRQTASPGPQYMGVTNSPKRPFAGDDYEELNRPRKLARGESPLKGAAGRRLDQQRRNQ
GAPLSRDITFLLSILPPAHSYAHSPNAFRLSAPNLVGLIRDTPVPDYSAWKTQQELGARQ
NNGMQPPSHSRQASGDYAGYGNGGRNSPQRALSPYEGSGRRLASSGYRSSPLRPGSSGGH
VDASAYRQDVPQQGQIPSAASFDASASWAPASYSQAPAQQYGKYQY
NT seq
3201 nt
NT seq
+upstream
nt +downstream
nt
atgccgacattctttggagcgcccatcatcgcaatggatcccgaagtcccgcagaacgac
caacaattcgagggtgcgtcttggggagaagatggatatgaagaaacaaatgatatacag
catagcgacgaacaaagtcaagatcctgccttcccacttgaacaagctgcgaatggtgac
tcagaagatgctggcgaatatgacccagagtcggtcgcgataacttcagttccagagacc
gcagagcccaatccccccgccgaatcaaccccaactcctaccgcttccacatccatcaag
tcgaaatcaggcaaacccaaaacacagggaggtttcctagtgggagactccgatgacgag
gaggaagatgcgcctactccagcatcgaacgctgttcctgctgttcctgccacgcagact
cccattgcacaaaaccctcctttcccttctgcatctactcctgtccaaggccaagtgagc
gccactccagagcaggcgagccagggtgtccccgtgcgagcgccaagtgcggcatcgagt
acggcgcaggcgccaccccctccagcagtgcagtctgtttccagcagagacccgaacgat
acttttggcatcttggaggaccgcgtgcaggaggatccaagaggggatatggatgcgtgg
ctcgcattgttcgccgagcatcgacgctatgaccagttggatgagttgcgcgctgcctat
gagcgattcctccaggttttcccccaggctgccgatatctgggccgactgggcacagctc
gagttggactccaaccgcttccaggacgccgaagcgcttttcagcaggtccttggtcaat
gtgcccaatgttaagctttggaccgtatacctcaactacatccgcagacgatacgattta
aacaacgatcccaacggggagtctcgccgaatcttgagcatgtcctacgattttgtgatt
gcttctgttggcattgatcgtgactcgggtcaactgtggaaggactacatccagtttatc
aagagtggcccaggccaggttggaggcagcggctggcaggatcagcagaagatggaccag
ttgcgcaaggcctaccatcgcgccatcacagttcccatgtttgcgcttacagacctgtgg
aaggactacgaccagttcgaaatgagcctgaacaaaacgactggccgccaattcatccag
aaacgctcgcctgcctacatgacagccaaggcagcaaattctcagcttgatcgcttgatt
cccaggctctcgcgaacttcgcttcctcgcctgcctcctgcacccggcttccatggtgac
caggaattcatggagcaggttgatatctggaagaagtggattcagtgggagaaggaggat
ccgttggttctcctggacgaagagcctgaagcctacaaaactcgcgtgctgtattgctat
aggcaagcgttgatggctcttcgtttctggcccgagatgtgggtggacgcagcagagtgg
tgctttgccaacaacattgcaaaagatggcaaggagctgggcctgtcttttctgacagac
ggcatcgaggccaatcccgaaagtgtattgcttgcgcttagacatggagaccgtgtggaa
acgacctacccggccggagacgatgatgctagcaaggctgcccgcgccaaggcaatcagg
gagccctacagcctcgttctcgacactttgtacgccatgtccaagaagctcaaggagcgg
gaggaaaaagaggttcgtaagatcgaagaagcttcggcccaggacccgaacatcaaggac
tcaatcgagcggaacgatgacgatatcgatggcgacaatcagcccggtgaacttggaagg
gaagagcgcatcaacgccgtgaagcagggattctcggtacagacagatatgctcaagcgc
actatttcgttcgtgtggattgcgctttgtcgggctgctaggaggacacaaggcaagggc
aatacgacttcgggtcttcgtcaagtctttatcgaggcccgaggtcgtggccagctcacc
agcgatgtctatatcgccgttgcgaagatggaagctctcatctacaacgacccagccggc
ggtaagatctttgaccgcggtgcgaagcttttccccgaggatgctagcttcatgctcgag
tacctcaagttcttgcactccaagggtgacacaacaaatgcccgtgttgtcttcgagaca
tgcgtcaaccgcctcacacagaaagaagataggaaggaccaggcgaagcaactctactca
tacttccacaagtacgaatcgcaatttggagagctctcctccattgctgagctggagaag
cgcatgtcggaactctggcccgctgatcccagactttcacactttgcaaaccgtttctca
gtagacacattcgaccccatagcctaccgccttatcatctcgccggctgttcaactgcgg
ccaaagatgctgattccgaccatcgagcagccgacctcagttcggcaatccccaatggcc
ttgccggttcgtcagacggccagcccgggcccacagtacatgggcgttacaaactctcca
aagagaccctttgcaggcgacgattatgaagagctcaacaggccacgaaagctcgccagg
ggagaatcccctcttaagggtgccgcgggccgtcgtcttgaccagcaaagacgcaaccaa
ggagcgcccctttcccgagacatcactttcctcttgagtatcctaccaccggctcactct
tatgctcactcgcccaacgcattccgcttgagcgctcctaatctcgttggcctgattcgc
gacacccctgtgcctgattacagcgcatggaaaacccaacaagagctcggcgctcgacaa
aacaacggtatgcaacccccttcccacagccgacaggcatctggtgactacgctgggtac
ggaaatggtggacgaaactccccccagagagccctcagtccatacgaaggatcgggtagg
cgcctggcatcatccggatacaggagctctcccctccgacctggctccagtggcggacat
gtcgacgcttctgcataccgacaggacgtgcctcagcaggggcagattccatcagcggct
tcgtttgacgcgagcgcttcttgggcacctgctagctacagccaagcaccagcacagcaa
tatggcaaatatcagtattga
DBGET
integrated database retrieval system
