Colletotrichum lupini: CLUP02_06432
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Entry
CLUP02_06432 CDS
T08561
Name
(RefSeq) DNA mismatch repair protein msh-2
KO
K08735
DNA mismatch repair protein MSH2
Organism
clup
Colletotrichum lupini
Pathway
clup03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
clup00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
CLUP02_06432
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
clup03400
]
CLUP02_06432
DNA repair and recombination proteins [BR:
clup03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
CLUP02_06432
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
MutS_IV
AAA_27
AAA_22
Motif
Other DBs
NCBI-GeneID:
73340441
NCBI-ProteinID:
XP_049142574
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All DBs
Position
3:complement(join(5613287..5615896,5615958..5616089,5616145..5616168))
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AA seq
921 aa
AA seq
DB search
MSSRPELKVDDEHGFIRFFKSLPAVHEDTVRIFDRGDWYTSHGEDANFIARTVYKTTSVV
RTLGRDEKTGLASVTMTVTVFRQFLREALFKLGKRIEIWESTGGRMNWKVVKQASPGNLQ
DVEEDLGGQIEAAPMMLAVKISTKASEARSVGVCFADASVRELGVSEFLDNDLFSNFEAL
LIQLGVRECLVQTDKADKNKDPDLTKLKQIIVNCGVAVSERSASEFGTKDIEQDLARLLK
DERATTLLPQTDLKLAMGSAAALIKYLGVLHDSSNFGQYQLYQHDLSQFMKLDAAALKAL
NLMPGARDGAKSMSLYGLLNHCKTPVGSRLLSQWLKQPLMNKEEIEKRQQLVEAFVNDTE
LRQTMQEEHLRSVPDLYRLAKRFQRGKANLEDVVRAYQVIIRLPGFLGTLEGVMDEAYRD
PLDEAYTTPLRELSNSLAKLSEMVETTVDLDALDNHEYIIKPEFDDSLRIIRKKLDKLKR
DIEQQFSDAARDLKQEVGKKIFLENHKVHGYCMRLTRQEAGAIRNKSGYQECSTQKNGVY
FTTKTLQSLRREFDQLSQNYNRTQSSLVNEVVGVAASYCPVLERLAGVLAHLDVIVSLAH
CSVHAPSEYVRPKIHKRGEGQTILKEARHPCLEMQDDVQFITNDVSLTRDKSSFLIITGP
NMGGKSTYIRQIGVIALMAQIGCFVPCSEAELTIFDSILARVGASDSQLKGVSTFMAEML
ETANILKSATAESLIIIDELGRGTSTYDGFGLAWAISEHIVKEIGCFAMFATHFHELTAL
ADDHPQVHNLHVTAHIGGGGGENSKREVTLLYKVDDGVCDQSFGIHVAELVRFPDKVVRM
AKRKADELEDFTSKHEDLGLKYSKTDIEEGSALLKEVLLKWKEEVAAGQMSKEEMVSKLK
GLVMADEKLLANPFFQSVKTL
NT seq
2766 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcccggccggaattgaaggtcgacgatgaacacggcttcattcgcttcttcaag
tcgctcccggccgtccacgaggatacagttcgcatattcgaccgaggcgactggtacaca
tcacatggcgaagatgccaacttcattgcccgcacagtctacaagacaacgtccgtcgta
aggacactcggccgagatgagaagacggggctcgcctcagtgacaatgaccgtcacggta
tttcgacaattcctccgagaagcactgttcaagctcggcaagagaatcgagatatgggag
agcaccggcggtcgcatgaactggaaagttgtcaagcaagcttcgcctggcaacctgcag
gatgtggaggaggacctcggtggccaaattgaagcagcaccgatgatgcttgccgtcaag
atctcaacaaaagcctcggaggcccggagtgtgggcgtctgcttcgccgatgccagtgtg
cgagaattgggtgtcagcgagttccttgacaacgaccttttctccaacttcgaggccctc
ctcattcagctcggtgtcagggagtgtcttgttcagacagacaaggcggataagaacaag
gatcccgacctgacaaagctcaagcagatcatcgtcaactgcggcgtagccgtctcggag
cggtctgccagcgagttcggtaccaaggatatcgagcaggacctggcacgtcttttgaag
gacgaacgcgccaccactctcctcccacaaaccgacctcaagttggccatgggctcggcc
gcggcgcttatcaagtacctcggcgttctccacgattcgtccaactttgggcagtaccag
ctgtaccagcatgacctctcacagttcatgaagctggatgcggcggcgcttaaggctctc
aacttgatgcccggcgcccgcgacggtgccaagtctatgagtttgtacggtctgctgaac
cactgcaagacacctgtcggtagcagactgctgtcgcaatggctcaagcaaccactcatg
aacaaagaggaaatcgagaagcgccaacagcttgttgaggcattcgtcaatgatactgag
ctgcggcagactatgcaagaggagcaccttcgctcagtcccggatctataccgcctcgcc
aagcggttccaaaggggcaaggcaaacctcgaggacgttgttcgtgcgtatcaggtcatc
attcgtctgcccgggttcttgggaaccctggagggcgtcatggacgaagcctacagagac
cctctcgatgaagcatacaccacccctctccgtgagctatccaatagtcttgcaaagctc
tcggagatggttgaaaccacggttgacttggacgcgctcgacaatcatgagtacatcatt
aagccagagttcgacgacagcttgaggatcatcagaaagaagctcgacaagctcaagagg
gatattgagcagcaattttcggatgccgctcgcgacctgaagcaggaagtcggcaagaag
atcttcctcgagaaccacaaagtccatggctactgcatgagactcacgagacaagaagcc
ggcgcaatccgtaataagtcgggctaccaggaatgctcaacgcagaagaacggtgtatac
ttcacgacgaagaccctacaaagtctccgccgcgagttcgatcagctgtcgcagaactac
aacagaacccagagcagtttggtcaacgaggtcgtcggcgtagctgcgtcgtactgccca
gtcttggagagactcgctggtgtcctggcacacctggacgtcatcgtttccctcgcacac
tgctcggtccatgcaccttcggaatacgtccgacccaagattcacaagcggggtgaaggc
cagacaatcctgaaggaggctcgacacccatgtctggaaatgcaagacgacgtgcagttc
atcacgaacgacgtctctttgactcgcgacaagtcttcattcctcatcatcactggcccc
aacatgggcggaaagtcaacatacattcgtcagattggcgtcatcgccctcatggcccag
attggctgcttcgttccctgcagtgaggccgagctaaccatcttcgactccatcctggcg
cgtgtcggagccagcgactctcagctcaagggcgtgtcaaccttcatggcggaaatgctc
gagacggccaacattctcaaatcggccacggccgaatcgctcatcatcattgacgagctt
ggtcgcggcacatcaacatacgacggcttcggcctcgcgtgggccatttccgaacacatt
gtcaaggagattggctgcttcgccatgttcgcgacgcattttcacgagctgacggccctg
gcggacgaccatccgcaggtgcacaacctgcacgtcaccgcgcacattggcggcggcggc
ggcgaaaacagcaagcgcgaggtgacgttgctgtacaaggtcgacgacggcgtgtgcgat
cagagcttcggtatccacgtggcagagctggtccgcttccccgacaaggtcgtgcggatg
gcgaagcgcaaggctgacgagctggaggactttacgtccaagcacgaggacctgggtctc
aagtacagcaagaccgatatcgaggagggcagcgcgctgctcaaggaggtgctgctcaag
tggaaggaagaggtcgccgctgggcagatgagtaaggaagagatggtttctaagctcaag
gggctcgtcatggcggacgagaagttgcttgcgaacccctttttccagtctgtcaagact
ttgtga
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