Colletotrichum lupini: CLUP02_07264
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Entry
CLUP02_07264 CDS
T08561
Name
(RefSeq) ATP-dependent RNA helicase FAL1
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
clup
Colletotrichum lupini
Pathway
clup03013
Nucleocytoplasmic transport
clup03015
mRNA surveillance pathway
clup03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
clup00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CLUP02_07264
09122 Translation
03013 Nucleocytoplasmic transport
CLUP02_07264
03015 mRNA surveillance pathway
CLUP02_07264
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clup03019
]
CLUP02_07264
03041 Spliceosome [BR:
clup03041
]
CLUP02_07264
03009 Ribosome biogenesis [BR:
clup03009
]
CLUP02_07264
03012 Translation factors [BR:
clup03012
]
CLUP02_07264
Enzymes [BR:
clup01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CLUP02_07264
Messenger RNA biogenesis [BR:
clup03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
CLUP02_07264
mRNA cycle factors
Stress granule specific factors
CLUP02_07264
Spliceosome [BR:
clup03041
]
Complex C
Other components
EJC/TREX
CLUP02_07264
Ribosome biogenesis [BR:
clup03009
]
Eukaryotic type
90S particles
Helicases
CLUP02_07264
Translation factors [BR:
clup03012
]
Eukaryotic type
Initiation factors
eIF-4
CLUP02_07264
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
AAA_30
AAA_22
TniB
COG4_N
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
73341269
NCBI-ProteinID:
XP_049143402
UniProt:
A0A9Q8SQV5
LinkDB
All DBs
Position
4:complement(join(521691..521749,521803..522843,522914..523019))
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AA seq
401 aa
AA seq
DB search
MAEGSGIDRKAEERMEFSTSKEVTVHPTFESMSLKENLLRGIYAYGYESPSAVQSRAIVQ
VCKGRDTIAQAQSGTGKTATFSISMLQVIDTAVRETQALVLSPTRELATQIQSVVMALGD
YMNVQCHACIGGTNVGEDIRKLDYGQHIVSGTPGRVADMIRRRHLRTRHIKMLVLDEADE
LLNRGFREQIYDVYRYLPPATQVVVVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGL
KQYFIAVEKEDWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDM
PQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRF
GRKGVAINFVTSEDVRILRDIELYYSTQIDEMPMNVADLIS
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atggcggaaggaagcggaatcgatcgcaaggcggaggagaggatggagttttcgacctcc
aaggaagtgacggtccacccgacctttgagtccatgtccctcaaggagaacctcctccgc
ggcatctacgcttatggctacgaatccccctcggccgtgcagtcccgcgccattgtccag
gtctgcaagggtcgcgacaccatcgcccaggctcagtccggtacgggtaagacggccacc
ttctcgatcagcatgctccaggttatcgatacggcggtgcgcgagacccaggccctcgtc
ctctctccgacgcgcgaactcgcgacccagattcagtctgtcgtcatggctctcggcgac
tacatgaacgtccagtgccacgcctgcatcggtggcaccaacgtgggcgaggatatccgc
aagctcgactacggccagcacatcgtctccggcacccctggccgtgtcgccgatatgatc
cgtcgccgtcatctccgtacacgccacatcaagatgctcgttctcgacgaggccgacgag
cttctcaaccgcggtttccgcgagcagatctacgacgtctaccgatacctgccccctgcg
acgcaggtcgtcgtcgtcagcgctaccctcccgtacgatgtactcgacatgacgaccaag
tttatgaccgatcccgttcgtatcctggtcaagcgtgacgagttgacactcgaaggattg
aagcagtacttcatcgccgtcgaaaaggaggactggaagtttgataccctttgcgatctt
tacgacaccctgaccattacccaggccgttattttctgcaacacccgcagaaaggtcgac
tggttgacggacaagatgcgcgaggccaacttcaccgtcagcagtatgcacggcgacatg
ccgcaaaaggagcgcgacagcattatgcaggacttccgccagggcaacagccgtgtgctc
atctctaccgatgtgtgggcgcgtggtatcgacgtgcagcaggtcagtttggtcatcaac
tacgacctgccaagtaaccgtgagaactacatccaccgtatcggtcgcagcggtcgcttt
ggacgtaagggtgttgccatcaacttcgttactagcgaggatgtgcgcattctgcgggac
attgagttgtactactctacccagatcgatgagatgcccatgaacgtggccgatctcatc
tcttaa
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