Colletotrichum lupini: CLUP02_07839
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Entry
CLUP02_07839 CDS
T08561
Name
(RefSeq) DEAD/DEAH box helicase
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
clup
Colletotrichum lupini
Brite
KEGG Orthology (KO) [BR:
clup00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clup03019
]
CLUP02_07839
03041 Spliceosome [BR:
clup03041
]
CLUP02_07839
03036 Chromosome and associated proteins [BR:
clup03036
]
CLUP02_07839
Enzymes [BR:
clup01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CLUP02_07839
Messenger RNA biogenesis [BR:
clup03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
CLUP02_07839
mRNA cycle factors
Common to processing body (P body) and stress granule
CLUP02_07839
Spliceosome [BR:
clup03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
CLUP02_07839
Chromosome and associated proteins [BR:
clup03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
CLUP02_07839
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
73341841
NCBI-ProteinID:
XP_049143974
LinkDB
All DBs
Position
4:join(2277428..2277585,2277676..2279574,2279624..2279714,2279786..2279830,2279972..2280034,2280128..2280298)
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AA seq
808 aa
AA seq
DB search
MADQLNMSGLNIQDQQNQPRSYIPPHMRKMGGAAPPAMNGGGGGINNSAWAAGNQQNFNA
AQPGGDWPAMGGPGGPGGPPAAAPAPQQNFHPRGGRGGWQGEGGGRGGYSGGGYGGHAGG
GGGQARGSGDGQWRDGKHIPGPVNPRVERELFGTPDDPSKQHTGINFEKYDDIPVEASGH
DVPEPVLTFSNPPLDNHLIGNIEMARYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGG
FLFPILSQAFINGPSAVPPNAAGGFGRQRKAYPTSLILAPTRELVSQIYEESRKFAYRSW
VRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLQNIKYLVLDEADRMLD
MGFEPQIRRIVEGEDMPNVQNRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSEN
ITQKVEYVEDVDKRSVLLDILHTHGAGLTLIFVETKRMADSLSDFLINQSFPATSIHGDR
TQRERERALEFFRNGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRA
GNTGHSTAFFNRGNRGVVRELLELLKEANQEVPSFLETIARESSYGGGRGGRPRGGGRGQ
GANRDFRKYGGGGAGGGGFGGAPGGGFSGGGGGGAYGGGGGGFGGPPGGGFGGGAGGGAG
YGGGGGGYGGGGYGNPGGPGGNSSWCLAVRRQAAFATSCEFSSFFFPLGLRAWVDMSQRL
CLSNPNEKHHRRGRIYGYTTRILDLPTHYDDHTKVDFLGRLVIIDAAGLPPGQTGQGSDI
EDKAAEIDWTGNGRFGWTVDRTDNHKTF
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atggctgaccaactcaacatgtctggcctgaacattcaggaccagcagaaccaaccccgc
tcgtacatcccgcctcacatgcgtaagatgggtggtgcggctcctccggcgatgaacggt
ggcggtggtggtatcaacaacagcgcttgggctgctggcaaccagcagaacttcaacgct
gctcagcccggcggcgactggcctgccatgggcggccctggcggtcccggcggtcccccc
gctgctgcccctgctcctcagcaaaacttccacccccgcggtggtcgtggtggctggcaa
ggcgagggcggtggccgcggcggttacagcggtggcggctacggtggtcacgccggcggc
ggcggtggccaggctcgcggctctggcgacggtcagtggcgcgacggcaagcacattccc
ggccccgtcaacccccgtgttgagcgtgagcttttcggtacccccgacgatccgtccaag
cagcacaccggtatcaacttcgagaagtacgacgacatccccgtcgaggcctctggacat
gatgttcccgagcccgtcctgaccttctcgaaccctcccctcgacaaccacctcatcggc
aacatcgagatggcccgctacaaggtccccacccccgtccagaagtactcgatccccatc
gtcatgggtggtcgtgatctcatggcttgtgcccagactggttccggaaagactggtggt
ttcctgttccccattctgtcccaggccttcatcaacggtccttctgcagttcctcccaac
gctgcgggtggcttcggtcgccagcgcaaggcttaccccacctccctgattctggctccc
acccgtgagctggtctcccagatctacgaagagtctcgcaagtttgcgtaccgttcctgg
gtccgcccttgcgttgtctacggtggtgccgacattggttcccagcttcgccagatcgag
cgcggctgcgacttgctcgttgctactccgggacgtcttgtcgacctcatagagcgtggt
cgcatctccctgcagaacattaagtacctcgtgctcgatgaggctgaccgcatgcttgac
atgggtttcgagccccagattcgccgcattgtcgagggtgaggacatgcccaacgtccag
aaccgccagactctcatgttctcggccactttcccccgcgacatccagatgctcgctcgc
gacttcttgaaggactacgtcttcttgtccgtcggtcgtgtcggttccacctctgagaac
attactcagaaggtcgagtacgtcgaggatgtcgacaagcgctctgtgctcttggacatt
ctccacacccacggtgctggtctcactctcatcttcgtcgagaccaagcgtatggccgac
tctctttcagacttcctgatcaaccagagcttccccgccacctccattcacggtgaccgc
acccagcgtgagcgtgagcgcgctctcgagttcttccgcaacggtcgttgccccattctg
gtcgctactgctgtcgctgctcgtggtctcgatatccccaacgtcacccacgttgtcaac
tacgacttgcccaccgacattgacgactatgttcaccgtatcggtcgtactggtcgtgcc
ggaaacactggtcactccactgccttcttcaaccgtggcaaccgtggtgtcgtccgcgag
cttctcgagcttcttaaggaggctaaccaggaggttcccagcttcctcgagaccattgcc
cgtgagtcttcctacggtggtggccgtggcggtcgtcctcgcggcggtggccgtggacag
ggtgccaaccgcgatttccgcaagtacggcggtggcggtgccggcggcggcggcttcggt
ggtgctcctggcggtggcttcagcggcggcggtggtggtggtgcctacggaggtggtggc
ggcggcttcggcggcccccctggtggcggcttcggcggcggtgctggcggtggcgccggc
tacggtggtggtggtggtggctacggcggtggtggctacggcaaccccggtggccctggc
ggaaactcgtcttggtgtctcgcggtacgccgccaggcagcttttgcaactagctgcgag
ttttcaagtttcttttttcctttgggtttgcgcgcatgggtcgacatgagccaacggttg
tgcctctcaaaccccaacgagaagcatcatcggcgtggccggatctacggatacacgaca
cggatcctggatctgcctacgcattacgacgatcatacaaaagtggattttctcggtcgt
ctggtcatcatcgacgctgcaggtctgcctccggggcaaacagggcagggcagcgatatt
gaggacaaggcggcggaaatagactggactggtaatggaaggttcggatggacggtcgac
agaacggataatcacaagacgttttga
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