Colletotrichum lupini: CLUP02_07935
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Entry
CLUP02_07935 CDS
T08561
Name
(RefSeq) RNB domain-containing protein
KO
K18748
protein SSD1
Organism
clup
Colletotrichum lupini
Brite
KEGG Orthology (KO) [BR:
clup00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clup03019
]
CLUP02_07935
Messenger RNA biogenesis [BR:
clup03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Other mRNA localization factors
CLUP02_07935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Dis3l2_C_term
OB_Dis3
CSD2
Rrp44_CSD1
Motif
Other DBs
NCBI-GeneID:
73341937
NCBI-ProteinID:
XP_049144070
UniProt:
A0A9Q8WH04
LinkDB
All DBs
Position
4:complement(join(2682613..2682652,2682706..2684054,2684102..2686632,2686777..2686801))
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AA seq
1314 aa
AA seq
DB search
MSMFANPGMEQLAIQQQIELLQQQQQQIQATQQQYMNMGMMPPTQQLGPGGAFNPLQPGM
APQGAFQFPQQIPQQNVSMGGPPTQPMSHRRNQSALPNMGMGPPPAPSSGASGTNFNDAS
GAGPGRENSGGRGGRGGGAGGGGHQRRHSLALADAKKAAEIAQQKRTTSAFSFPMSPSTE
ASAEGGASAPAPAPTQPEAPIAQGTSAGRGRGGHGRSQSMAVNGRGGAAGRGGFSGDASQ
NDFGRRGSQTGGGGHARTGSRNFDGNWRNQGANQGQEQGGFQPGHRTRGSVNQSISNIGA
FQYPGQPQLMQMPGNMLPMGMYPGQQLNPMQIQQLQALQAAQMGGQQFVGLQGGQHGGQL
GGNQQQQQQRKTLFTPYLPQATLPALLGDGQLVSGILRVNKKNRSDAYVSTQDGLLDADI
FICGSKDRNRALEGDLVAVELLDVDEVWSQKREKEEKKKRKDITDTRSGSTNGQNQSSGN
NDDNTQQEGGIRRRGSLRQRPTQKKNDDVEVEGQSLLLVEEEEINDEAKPLYAGHIVAVV
ERVAGQMFSGNLGLLRPSSQATKEKQEAERAARHGGNNRHHDNRSQEKPKIVWFKPTDKR
VPLIAIPTEQAPRDFVEKHQDYADRIFVACIKRWPITSLHPFGTLVEQLGRMGDLKVETD
ALLRDNNFSSDEFSEAVLRSVGLQDWSLAKEEEAALAARRDFRDEKVVTLDLNGSPELAN
AIHIKTQPDGKIDIGIHIPDVTHFVKPNSLVDREAKKRGTAVHLVNRTCALLPPKIGGEV
CSLAPGEERLAVSVLFRVNPHNGSVAEGDTWIGKSIIKSTAKITIEEIDSALNGQADWKH
ESLQLKDVQILNAVAQKFTEARLGAGGEPIAPLRLLQQLDDENIPIKHNIFDSTPATELV
EELMHKANTYVAQRLAQALPEKALLRRQGPPNARRLQTFADRMNALGYEVETSGSGSMHN
SLFKVDDADIRKGMETLVLKSMQRAKYFIAGKTAKQLWPHYALNLPLYTHFTSPTRRYAD
IIVHRQLESILSEGKIEYTEELESLVKTIESCNTKKDSAQNAQEQSIHIESCREMDKKRQ
QVNGDLITEGIVLCVYESAFDVLIPEWGFEKRVHCDQLPLKKAEFRKEKRVLELYWEKGV
PSSAYVPEDERPKAAASVRNANAAAAARQAEAAERAKKEREEAARKQTETGTISTDDVDA
LFDDDDDNASDVTEAMAGASLAERPTQSVPGSPTRSDAKPLQRTRSDSKVPAPEAPEARL
SNKEKYLKLFKLREEGGEYIQDVTEMSRVPVILKTDLSKSPPCLTIRSLNPYAL
NT seq
3945 nt
NT seq
+upstream
nt +downstream
nt
atgagcatgtttgccaacccgggtatggaacagctagctattcagcagcagattgagctt
ttgcagcaacagcagcaacagatccaagctacgcagcaacaatacatgaacatgggaatg
atgccccccacccaacagctcggtccaggcggtgctttcaatcccctgcagcccggcatg
gctccccagggcgccttccagttcccccagcagattccgcagcagaatgtctccatgggc
ggtcctccgacccagccaatgtcacatcgccgtaatcagtcggcactccccaacatggga
atgggtcctcctcccgccccctcctctggtgcatccggcacgaacttcaacgatgcctcc
ggcgccggtcccggcagggaaaactccggtggccgtggcggtcgtggtggtggtgccggc
ggcggtggacaccagcgacgtcactctttggcgcttgccgacgcgaagaaggcggcagaa
atcgcacagcagaagcgcacgacatccgccttctccttcccaatgtccccctccaccgag
gccagcgccgagggtggtgcctccgcccccgcccccgctccgactcaacccgaggctccg
attgctcagggcaccagtgccggccgtgggcgcggtggccatggtcgcagccagagtatg
gctgtgaacggtcgcggcggcgccgctggtcgcggtggcttctctggtgatgctagccag
aacgactttggtcgtcgcggcagccagactggcggcggtggtcacgccagaaccggctct
cgcaactttgacggaaactggcgcaaccagggtgctaaccagggccaggagcagggcggc
ttccagccgggccaccgcactcgtggttctgtaaaccagtccatctccaacatcggcgca
ttccaataccccggtcagcctcagcttatgcagatgcctggcaacatgctccccatgggc
atgtacccgggccagcaactgaaccccatgcaaatccagcaacttcaggcccttcaggct
gcccagatgggcggtcagcaattcgttggccttcagggcggccagcatggtggccagctt
ggtggaaaccagcaacagcaacagcagaggaagactcttttcactccttacctcccccaa
gccaccctcccggctcttctcggcgatgggcaactcgtgtctggtattcttcgcgtgaac
aagaagaaccgcagcgacgcctacgtttccactcaggacggcctgcttgatgctgatatc
tttatttgcggtagcaaggatcgcaaccgtgccctcgagggtgacttggttgccgttgag
cttctagatgttgatgaagtttggtcccagaagcgtgagaaggaagagaagaagaagcgc
aaggacatcaccgatacccgttctggatccaccaacggccagaaccagtcatccggtaac
aacgatgacaacacgcagcaggagggcggcattcgtcgtcgcggcagtctgcgccagcgc
cccactcagaagaagaacgacgatgtcgaggttgagggtcaaagcctgcttctcgtcgag
gaggaggaaatcaacgatgaggccaagcccctgtacgcaggtcacattgtggctgtcgtt
gaacgtgtagctggtcaaatgttctcgggcaacctcggtctgctccgtcccagcagccaa
gctacgaaggagaagcaggaagcggagagagccgccagacatggaggcaacaaccgccac
cacgacaaccgttcgcaggagaagcccaaaattgtttggttcaaacctaccgacaagcgc
gtgccgctcattgccattccgactgagcaggcgccgcgcgatttcgtcgagaagcaccag
gattacgctgatcgcatctttgttgcctgcattaagcgttggccgatcacctctctgcat
cccttcggcactcttgtcgagcagttgggccgcatgggcgaccttaaggtggagaccgac
gctctgctgcgcgacaacaacttttcttccgatgagttctccgaggctgtgctgcgcagc
gtcggccttcaggactggtctctcgctaaggaagaggaggctgccttggctgctcgccgg
gacttccgtgatgagaaggttgttacgctcgacctcaacggttctcccgagcttgccaat
gccatccacatcaagactcagcctgatggcaagattgacattggtattcacattcctgat
gttactcacttcgtcaagcccaactcgcttgtcgaccgagaagccaagaagcgcggcacc
gccgttcacttggtcaaccgcacatgcgcactccttcctcccaagattggtggagaggta
tgctctttggctcctggtgaagagcgtctggctgtcagtgttctcttccgtgttaaccct
cacaacggctctgttgccgagggagacacttggatcggcaagagtatcatcaagagcact
gccaagatcactattgaggagatcgattcggctctaaacggtcaggccgattggaagcac
gagtctcttcaactgaaggatgtccagatccttaacgctgtcgctcaaaagttcaccgag
gcccgtcttggtgctggcggtgagcctatcgcgcccctcaggcttctgcagcaactcgat
gatgagaacattcccatcaagcacaacatcttcgattctacccctgccactgagctcgtc
gaggagctcatgcacaaggccaacacttacgttgcccagcgtctcgcccaggctctgcct
gagaaggctcttctgcgccgacagggcccccccaatgctcgtcgccttcagaccttcgcc
gatcgcatgaacgcccttggctacgaggttgagacttctggcagcggaagcatgcacaac
agccttttcaaggttgacgacgccgatatccgcaagggaatggagacgcttgtcctcaag
tctatgcaacgtgccaagtacttcattgccggcaagactgctaagcagttgtggcctcac
tatgccctcaacttgcctctttacactcatttcactagccccacgcggcgctacgccgac
atcatcgtccaccgtcagctcgagtctatcctctccgagggtaagattgagtacacggag
gaattggagagccttgtcaagaccattgagtcttgcaacaccaagaaggactccgcacag
aatgcccaggagcagagcattcacattgagtcctgccgtgagatggacaagaagcgccag
caggtcaacggcgatctcatcacggagggtatcgtcctctgcgtgtacgagtcggccttt
gacgttctcattcccgagtggggctttgagaagcgggtgcactgcgaccagttgcccctc
aagaaggccgagttcagaaaggagaagagagtccttgagctctactgggagaagggcgtg
cccagctccgcctacgttccggaggacgagcgccccaaggctgctgcgtctgtaagaaac
gccaacgctgctgctgctgctcgccaagcggaagctgcagagcgtgccaagaaggagagg
gaggaggctgcacgcaagcagaccgagacgggcaccatctctactgacgacgtcgatgcc
cttttcgacgacgatgacgacaatgcgtcggacgttactgaggccatggctggagcttcg
ttggccgagagacccacacagagcgtccccggctccccgacccgatccgatgccaagccc
ttgcaacgcaccaggtccgactccaaggttcccgcacctgaggcccccgaggcccgcctg
tcgaacaaggagaagtacctcaagcttttcaagctgcgtgaggagggaggagagtacatt
caggacgtcacggagatgagcagggttcctgtgattctcaagacggatctgtccaagagc
ccaccctgcttgaccattcggtctttgaacccctatgctctgtaa
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