Colletotrichum lupini: CLUP02_08097
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Entry
CLUP02_08097 CDS
T08561
Name
(RefSeq) replication factor C
KO
K10755
replication factor C subunit 2/4
Organism
clup
Colletotrichum lupini
Pathway
clup03030
DNA replication
clup03410
Base excision repair
clup03420
Nucleotide excision repair
clup03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
clup00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CLUP02_08097
03410 Base excision repair
CLUP02_08097
03420 Nucleotide excision repair
CLUP02_08097
03430 Mismatch repair
CLUP02_08097
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
clup03032
]
CLUP02_08097
03036 Chromosome and associated proteins [BR:
clup03036
]
CLUP02_08097
03400 DNA repair and recombination proteins [BR:
clup03400
]
CLUP02_08097
DNA replication proteins [BR:
clup03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
CLUP02_08097
DNA Replication Termination Factors
ELG1-RFC complex
CLUP02_08097
Chromosome and associated proteins [BR:
clup03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
CLUP02_08097
DNA repair and recombination proteins [BR:
clup03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
CLUP02_08097
Check point factors
HRAD17(Rad24)-RFC complex
CLUP02_08097
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
AAA_14
AAA_16
AAA_22
nSTAND3
RuvB_N
Viral_helicase1
RCF1-5-like_lid
DNAX_ATPase_lid
AAA_3
Mg_chelatase
AAA_assoc_2
Rad17
MeaB
AAA_11
NTPase_1
AAA_24
Gp44_lid
AAA_19
KTI12
AAA_18
ATPase_2
Motif
Other DBs
NCBI-GeneID:
73342097
NCBI-ProteinID:
XP_049144230
LinkDB
All DBs
Position
4:complement(join(3458106..3458854,3458913..3459133,3459193..3459366,3459405..3459508))
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AA seq
415 aa
AA seq
DB search
MSVRLSAGDQARKTRVDPEKLSAFRTRRVFSMSIANLTICYLHLPTSQPKEKAAMPAQKQ
ITKPEEAGESSTSAAKKALTAASNGVPNYELPWVEKYRPVFLDDVVGNTETIDRLKIIAK
EGNMPHVIISGMPGIGKTTSVLCLARQLLGDTYKEAVLELNASDERGIDVVRNRIKGFAQ
KKVTLPQGRHKLVILDEADSMTSGAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRC
AILRYARLTDEQVVKRLLQIIEAEKVEYSDDGLAALVFSAEGDMRQAINNLQSTFAGFGF
VSGDNVFKVVDSPHPIKVQAMLKACYEGNVDSALECLRELWDLGYSSHDIISTMFKVTKT
IPTLSEHSKLEFIKEIGFTHMKILEGVQTLLQLSGCVARLCKLNMDPKRFEAPSK
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atgtcggtgaggttgagtgctggagaccaggcaaggaagacaagggtggacccagagaag
cttagcgcgttccgcacccgacgcgtcttttcgatgagcatcgccaacttgacgatctgc
tatctgcatctcccaacatcccagccaaaggaaaaagccgccatgcccgctcagaagcag
atcacgaagccagaggaggctggcgagtcttcgacgtccgcagccaagaaggcattgact
gcggcgtcaaacggcgttcctaattatgagcttccctgggtcgaaaagtaccgcccagtc
ttccttgacgacgttgtcggaaacaccgagacgattgatcgcctaaagatcattgcaaag
gagggaaacatgccgcacgtcatcatctcgggcatgcctggtatcggcaagactaccagt
gtgctttgcctggcgagacaattgctcggagacacatacaaggaggctgtattggagctc
aacgccagcgacgagagaggaatcgacgtcgttcgcaaccgcatcaagggcttcgcgcag
aagaaggtcaccctgccccaaggccgccacaagctcgtcatcctcgacgaggccgacagc
atgacatcaggcgctcagcaggccctccgccggacaatggaaatctactccaacacgacg
cgcttcgccttcgcctgcaaccagtccaacaagatcatcgaaccgctgcagtcacgatgc
gccatcctccgctacgcccgactcaccgacgagcaggtcgtcaagcgactgctgcaaatc
attgaagctgaaaaggtggaatacagcgacgacggcctcgcggcactcgtcttcagcgcc
gagggcgacatgcgtcaggccatcaacaacctgcagtcgacgtttgccggcttcggcttc
gtgtcgggcgacaacgtcttcaaggtggtggactcgccgcacccgatcaaggtccaggcg
atgctcaaggcgtgctacgagggcaatgtcgactcggcgctcgaatgcctgcgggagctc
tgggacctggggtactcgagccacgacatcatcagcaccatgttcaaggtcaccaagacg
atcccgacgctgagcgagcattccaagctcgagttcatcaaggagattggattcacgcac
atgaagattctggagggcgtgcagacgctgctgcagctgagcggctgcgttgcgaggctc
tgcaagctcaacatggaccccaagaggttcgaggctccctcaaaatga
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