Colletotrichum lupini: CLUP02_08347
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Entry
CLUP02_08347 CDS
T08561
Name
(RefSeq) HIT domain-containing protein
KO
K10863
aprataxin [EC:
3.6.1.70
3.6.1.71
3.6.1.72
]
Organism
clup
Colletotrichum lupini
Pathway
clup03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
clup00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CLUP02_08347
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
clup03400
]
CLUP02_08347
Enzymes [BR:
clup01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.1 In phosphorus-containing anhydrides
3.6.1.70 guanosine-5'-diphospho-5'-[DNA] diphosphatase
CLUP02_08347
3.6.1.71 adenosine-5'-diphospho-5'-[DNA] diphosphatase
CLUP02_08347
3.6.1.72 DNA-3'-diphospho-5'-guanosine diphosphatase
CLUP02_08347
DNA repair and recombination proteins [BR:
clup03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
CLUP02_08347
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
CLUP02_08347
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C2HE
DcpS_C
HIT
Motif
Other DBs
NCBI-GeneID:
73342347
NCBI-ProteinID:
XP_049144480
UniProt:
A0A9Q8SSN4
LinkDB
All DBs
Position
4:join(4139123..4139169,4139293..4139410,4139496..4139563,4139623..4139759,4139827..4140557,4140609..4140709,4140793..4140922)
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AA seq
443 aa
AA seq
DB search
MENAVGGEDENAVGLSKPLAVSGCRGGLQWPLSDLYVDGGWHWMEGHGFSCSSPADIAFG
RNETADRSFEATESSLPLLSHTRPLNIPPARQTMAGTDSDPEDAITKDEIQGTAAAPAQP
RNAFAELMTRKRKPEPTLEPPKASSRNKPPHTSRDGLGVYIENPSSFPASRVIYHNDDFV
AINDLYPKASVHTLLLPRSPKYTLLHPFEAFDDPEFLATVQNEVLKLKDLVAKELQRRFA
TESKAEADREAVLDGRAEPTGAELPQGRDWHAEIISGIHAHPSMNHLHVHVLSRDMYSVC
LKHRKHYNSFNTPFLVDVADFPLAPDDPRRHPGHEGYLMKMDLVCWRCKDNFKNQFAKLK
QHLSQEFERNKGANEQKQSVEQHNLSPKTEGCVFTITTIEGRERTRTVIDTKPTKQIGSD
TPTPSYVFPSVRQTKNPKIPCEM
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atggaaaacgctgttggcggtgaagacgagaacgcagtcggtctatcaaagccacttgcc
gttagcggttgcagaggcggtttgcagtggccactcagcgacctttacgttgatggcggc
tggcactggatggaggggcacggcttctcctgcagctcccccgctgacatagcctttggt
cgcaacgagaccgcagaccgcagctttgaagctacggagtcttctttaccactcctttcc
cacacccggcctttaaacatcccacccgcaagacagacaatggcgggcacagactcggat
cctgaagacgccatcaccaaggatgagatccaagggaccgccgccgcgcctgcacaaccg
cgaaatgcgttcgcagagctcatgacacgaaaacgcaagcccgaaccgaccctagaacct
cccaaggcttcttctcgaaacaagccccctcacacaagccgcgatggccttggtgtatac
atcgaaaacccgtcctccttccctgcctcgcgagtgatctaccacaatgacgatttcgtc
gccatcaacgacctgtacccgaaagccagcgtccacacgctactgctccctcgatccccc
aaatacaccctccttcatccgttcgaagcctttgacgaccccgagttcttagcgacggta
caaaatgaagtcttgaagctgaaggacctcgtagccaaagagctacagcgacggttcgca
acggaaagcaaggccgaggcagatcgagaagccgtgctcgacggacgcgcagagccgaca
ggcgccgagcttccccagggccgtgactggcacgccgagattattagcggcatacatgcg
catccaagcatgaaccatctgcacgtccacgtactttcgcgagacatgtattccgtgtgc
ttgaagcatcgcaagcactacaactccttcaataccccttttctggtcgatgttgccgat
tttccactggccccggacgaccccaggcgtcatcccggccacgagggctacctcatgaag
atggaccttgtttgctggaggtgcaaggataacttcaaaaaccagtttgcgaagctgaag
cagcacctctcccaagaattcgagcgcaacaagggggcaaatgagcaaaagcaaagcgtg
gagcagcacaacctcagcccaaagacggaaggttgcgtcttcacaataacaaccatagaa
gggcgggagaggaccaggaccgtcatcgacaccaagcccactaaacaaatcggaagcgat
accccaacgccttcttatgttttccccagtgtccgccagacgaaaaatcccaagatcccg
tgcgaaatgtag
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