Colletotrichum lupini: CLUP02_08633
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Entry
CLUP02_08633 CDS
T08561
Name
(RefSeq) DEAD/DEAH box helicase
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
clup
Colletotrichum lupini
Brite
KEGG Orthology (KO) [BR:
clup00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clup03019
]
CLUP02_08633
03041 Spliceosome [BR:
clup03041
]
CLUP02_08633
03036 Chromosome and associated proteins [BR:
clup03036
]
CLUP02_08633
Enzymes [BR:
clup01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CLUP02_08633
Messenger RNA biogenesis [BR:
clup03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
CLUP02_08633
mRNA cycle factors
Common to processing body (P body) and stress granule
CLUP02_08633
Spliceosome [BR:
clup03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
CLUP02_08633
Chromosome and associated proteins [BR:
clup03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
CLUP02_08633
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Motif
Other DBs
NCBI-GeneID:
73342629
NCBI-ProteinID:
XP_049144762
LinkDB
All DBs
Position
4:complement(join(5117913..5118322,5118426..5118917,5118975..5119412,5119496..5119659,5119707..5120026))
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AA seq
607 aa
AA seq
DB search
MSRLPPAEMSAFDTADMQSALSADGKKAPAAAVNSDGTKWAEPLPYNYDELAQQGPEVAT
EWAGNGAVYEWDEEFGDVGPKFPDLELALFGDSNSRIASNSGLDFSVISSVEVTQEGEIR
VEPVHSYKDAGLHPVMLENIDLCGYEAPTPIQKYTLPAIHKGSGKTAAYLIPILNKLMGK
AKKLAAPRPNPAEIALGQQWVRAEPLVVIVCPTRELAIQIFNEARKFCYRTMLRPCVAYG
GGPLRDQIQQLGKGCDVLIASPGRLVDFIQRPDTLSLKRLRYMVFDEADEMLHDDWREEM
DVIMTGGEQQEGNIKYMLFSATFPKPLRDLAKENLSSSSVRINIGRIGSTHTNILQRVFK
FDAFEKKEALKDQINSLPACRTIIFVNHKRTCDDLDDFLFNLGFPCTSMHADRTQLEREA
SMRAFRAGKSPILIATGISARGIDVKNVNHVINFDLPSLDHGGIEEYTHRIGRTGRMGQR
GIATSFYTDRDEPMASVLVRTLLETKQEIPDFLEAFKPTGKGLENLKFETESDFDPEEAG
IAHLGGEGGGWSNEGGGGDAGGDGSWGATGGDSGWGGGGDSADNDTKQEEPEAAPAWGAS
SGGGGSW
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgagcagacttcctcccgccgagatgtctgccttcgacactgccgatatgcagtcggct
ctttctgccgatggcaagaaggctcctgccgctgctgtcaacagcgatggtacaaaatgg
gctgagcctctgccctacaactacgacgagcttgcccagcagggtcccgaggttgcgact
gagtgggctggcaacggtgccgtttacgagtgggatgaggagtttggcgacgtcggcccg
aagttccccgacctcgagctcgctctcttcggtgattccaactcccgcattgcctctaac
tctggcctcgacttctctgtcatctcttctgtcgaggttacccaggagggtgagatccgt
gttgagcctgtccactcctacaaggacgccggcttgcaccctgtcatgctggagaacatc
gatctttgcggctatgaggccccgacacccatccagaagtacacccttcccgccattcac
aagggttccggcaagaccgcggcttaccttattcccatcttgaacaagctcatgggcaag
gccaagaagctcgctgcacctcgccccaaccctgccgagattgctcttggacagcagtgg
gttcgtgcagagcctctggtggtcatcgtttgtccaactcgcgagctggctattcaaatc
ttcaatgaggcccgcaagttctgttacagaactatgcttcgcccgtgtgtcgcctatggc
ggtggtcccttgagggaccagattcagcagcttggaaagggctgtgatgttctcatcgct
tcccctggtcgtcttgtcgacttcatccagcggccagacactctctcgctcaagcgcttg
agatacatggtcttcgacgaggccgatgagatgctgcatgatgactggcgcgaggagatg
gatgtcatcatgactggcggtgaacagcaggagggaaatatcaagtacatgctgttctcg
gctacctttcccaagccgctccgcgatctcgcgaaggagaacctgtcttcctccagcgtc
cgcatcaatatcggtcgcattggaagcacccacaccaacattctccagcgcgtcttcaag
ttcgacgccttcgagaagaaggaggctctcaaggatcagatcaactctcttcctgcctgc
cgcaccatcatcttcgtcaaccacaagcgtacttgcgatgacttggacgacttcttattc
aaccttggcttcccttgcacctcgatgcatgctgatcgcactcagcttgagcgtgaggct
tctatgcgcgctttccgtgctggaaagtctcccatccttattgccactggcatcagcgct
cgcggcattgacgtgaagaatgtcaaccacgtcatcaacttcgacctgcctagcttggat
catggtggcattgaggagtacacccatagaatcggccgcaccggtcgtatgggtcagcgt
ggcattgcgacttctttctacactgaccgcgatgagcccatggctagcgttctcgttcgc
accctcttggagactaagcaggagattcctgacttcctcgaggctttcaagcccactggc
aagggccttgagaacctcaagttcgagactgagagcgacttcgaccccgaggaggccggc
attgctcaccttggcggcgagggcggcggctggtccaacgaaggcggcggtggcgatgct
ggaggcgatggctcctggggcgctactggaggcgattctggctggggtggtggcggcgat
tctgctgataacgataccaagcaggaggagcccgaggccgctcccgcttggggcgcttct
tctggcggtggtggttcttggtaa
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