Colletotrichum lupini: CLUP02_08881
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Entry
CLUP02_08881 CDS
T08561
Name
(RefSeq) helicase sen1
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
clup
Colletotrichum lupini
Brite
KEGG Orthology (KO) [BR:
clup00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
clup03021
]
CLUP02_08881
Enzymes [BR:
clup01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
CLUP02_08881
5.6.2.5 RNA 5'-3' helicase
CLUP02_08881
Transcription machinery [BR:
clup03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
CLUP02_08881
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SEN1_N
AAA_11
AAA_12
SEN1_barrel
AAA_19
UvrD-helicase
AAA_30
Viral_helicase1
AAA_22
Motif
Other DBs
NCBI-GeneID:
73342872
NCBI-ProteinID:
XP_049145005
UniProt:
A0A9Q8STT7
LinkDB
All DBs
Position
4:complement(join(5948738..5948830,5948884..5949114,5949185..5951036,5951090..5954809,5954872..5955230))
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AA seq
2084 aa
AA seq
DB search
MESQPVEDILEQSYRKFTQIPPDFHLLCPKVDEDDFEDYDDLNTDGEDITALEKKERVEK
WKERLDIAYWTSLLLAYGKDKAGVWLDAWGSRMAINLHNCDKCVLNWHMYRKKYLQVFSE
KWPEEAVAGIENCLHRFDFDRIDKGLQWAKDIILKVENEGRAFARSDLGEEQGAVLLTVY
EALCCMAYVSVPEKRTLFQFVFVRLSGKKPLKLGENVLLPAMTQFLFGEDKVRLQFAEKS
WERLRPKSLTQEQFNWAIHDNLVVAIQSVSALNPRDPASLPEIERFWKAVNWIIKTLDEK
LLLHGIRGMEIKPSIYDLLFVHMQCESEAILLLIIQALTVLLETSPQAFWDTIGDARPFV
VIEQLLSQPLFKQLLAQSLTFAIKYDDGTGKSDSVESITTSWINTWIASLKRQQKGDACE
QLLHLLFEQVIHDARIGEQGKAACIRAGLDALDHVLRSFLDPTIDVISGTTSVYINTILN
VTLKYKDIINEGADTRSTDQHTLGVPKAAMSVISAALSLDSRVTAEEHLELRKATPKPIQ
TAVTRKSADLWDGFLENLYEGKLILAKTMLMAMAPLINVERFHPNKKEPEKLDPAKKSFN
ARFQMVAEALGRVLQRMCEFTSSQLNELCLMAQSIRPIIAFTVHGEDEISSASAELIKLI
TEQPSKEDALTVLLERNLSTTLSSMIFAIRRIMEPAHAAWGPARNIINTAKVVLSGLGDL
SSGILRSKTLDSNEQIAVTGWWVAHWRYIEVAFTSTGNWSHLADIKVMQDFCRDVIELAD
GMLAQDGLFASALQATTSQNDVKQAKPKEEELTKMQQLLKDPQRHLFGIVRMLRLRDTYL
VEVTVKVVAKLLTRLRENSIDIPSDSKNYVQDSCIKLSTTGRYPVTTNMNDQQRAELLKA
LGEDDDIEIIQIQPVSKEKPKKQSFLDAWSKSGSSTPTSQAVRSNKDDVLELSSSVDKKR
SILDQMAARQKAPPAIPRMAVKPKLEPVVTQASKNALIESRKKAKLEKAKRDADEVARVR
ALRGAANVGEGSGLKGLSGVVGKEHTTQKSQILVDSDEEEDDDSGEEDLNNLINKGQQGQ
KAVDEAQRRRERALLEKTRGPVKKVKVQRSAKDMRARLIPPMDQLHQAILEWDIFHEGND
PPSTSSSMAITRVASSYAHPQEYKQTFLGLLISEAWRSFVTAKDESTSKPYGLKIASRMN
VDKFLEVTASIPKTESKERLLSEGDIILVSKSTDPLTDKSEAHALARIWKTTYKKERLEV
TYRLNSKNNPLLAINALGVGAELQAVKITNMTTIEREYAALESLQYYDLMLEVLKAEPSP
ILKYGDEAVKGVMQNYQLNPGQAKAILGAKDNDGFTLIQGPPGTGKTKTIVAMVGSLLTG
NIQPPGTAIKPKLPTQGQAAMPKKLLVCAPSNAAVDELVLRLKQGVKTMTGSFHKINVLR
LGRSDAINAAVRDVTLDELVKKKLEGDTTQNKAKEERDKMHNDAAKIRDELAELRPKLDE
ARKNGDRNLSLALQRAFDQLKRAQINIGAKIDDDKTSGNTVSREAEIRRRQIQQEILDGA
QVLCATLSGSGHEMFKNLNVEFETVIIDEAAQCVELSALIPLKYGCTKCILVGDPKQLPP
TVLSQSAARFGYDQSLFVRMQQNHPDYVHLLDRQYRMHPEISLFPSLEFYEGKLVDGEDM
SALRRQPWHASALLGPYRFFDVEGTQSKGSKGRSLVNHSELKVAMQLYERFKTDFGRNYD
VRGKIGIITPYKAQLQELKWQFARRYGESITEDIEFNTTDAFQGRECEIIIFSCVRADPT
GGIGFVKDIRRMNVGLTRAKSSLWILGDSRALVQGEFWNKLIDNAKQRSLYTKGDVMSML
QKPSVLQALPPSPPKPAQKNDFDAEIVDQLQIKDVDLADVAPTAQPRKPSQPAQQPPTNY
PVPERRSGSWEGNNRGDAHHSAARNSDRPPIIQSSTAKQESKKRPSDANEGQRGAKRMAT
EQNRLPNRPPPTGPKAMIQAKEPKAPKPAKDPSAMVALGLTPAARPPAMETTASSSRTLP
TNSSLPQNRNLPQRPPGQGGPNGPVIHRKKQKADPFIQRKPHKR
NT seq
6255 nt
NT seq
+upstream
nt +downstream
nt
atggagtcacaaccggtcgaggatatcctcgagcagagctatcggaagtttacccaaatt
cctcccgacttccaccttctctgtcccaaggttgacgaggatgattttgaggactacgac
gacctaaacactgatggcgaagatatcacagctctagagaagaaggagagagtagaaaaa
tggaaggagcggctcgacatcgcctactggactagtcttctccttgcctatggcaaagat
aaggctggtgtttggctcgacgcctggggcagccggatggctattaacctccacaactgc
gacaagtgcgtcctcaactggcacatgtatcgcaagaagtatcttcaggtcttttccgaa
aaatggccagaggaagccgtcgccggcatcgagaactgcctccaccgcttcgatttcgac
cgaatcgacaaaggtcttcaatgggccaaggacatcatattgaaggttgagaatgagggc
cgcgcctttgcgaggagcgacttgggcgaggaacagggcgcagttttgctcactgtttac
gaggctctatgttgtatggcatacgtcagcgtgccggagaaaagaactctgttccagttc
gtcttcgtccgcctctctggcaagaagccactcaagctgggtgaaaacgtcctgctccct
gccatgacccagttcctctttggagaagacaaggtccgcctccaattcgccgaaaagtcc
tgggagcgcctgcggccaaagtctttgacacaagagcaattcaattgggctattcacgac
aacttggtggtcgctattcagtcagtttcagcactcaaccccagagatcccgcatccctt
ccggagatcgaacgtttctggaaagccgtcaactggatcatcaagaccctagacgagaag
ctcttgttgcacggaattcggggtatggagatcaagcccagcatctacgacttgctcttc
gttcatatgcagtgcgagtcggaggcgatcctgctgctcatcattcaagccttgactgtc
ctgctcgaaacgtcaccacaggctttctgggatactattggtgacgcgagaccattcgtc
gtcattgagcagctcctctcccagcctttgttcaagcagcttcttgcgcaatctttgacc
ttcgccatcaagtatgacgatggcacgggcaaaagtgactcggtcgagtcaatcacaacc
tcgtggatcaacacatggattgcctcacttaaacgtcagcaaaagggcgatgcttgcgaa
cagctgcttcacctgcttttcgagcaagtcatccacgatgctagaatcggagagcaagga
aaggccgcttgtatcagggctggcttagatgcgctagaccatgtcctgcgatcgtttctg
gaccctacaattgatgtcatctcaggcaccacatctgtctacatcaacacaattctcaac
gtcactctcaagtacaaagatatcatcaacgaaggtgcggacaccagaagcacggatcaa
cacacactgggtgtgcccaaggcagccatgagcgtcattagtgccgccttgagcttggac
tctagagtaactgctgaggagcatctcgaacttcgcaaggctacgcccaagccgatccag
actgccgtcacccgcaaatcggcagacttgtgggacggattcctggaaaacctttacgaa
ggcaagctcatcctagccaagaccatgctgatggcaatggctcctcttatcaacgttgag
agattccatcctaataagaaggaacctgaaaagttggatccggcgaagaagagcttcaat
gcccgtttccaaatggttgcggaggcactcggacgcgttctgcagcgaatgtgcgagttt
acgtcatcgcaactcaacgagctgtgcctcatggcccagagcattcggcccatcattgct
ttcacagtccacggcgaggacgaaatcagcagtgccagtgccgaacttatcaagttgatt
actgaacagccttccaaggaggacgcactcaccgttttacttgaacggaatcttagcacc
actctctcttcaatgattttcgcaataagaagaatcatggagccggcacatgcagcatgg
ggacccgctcgcaatatcatcaacaccgccaaagtcgtgctctcaggtctcggtgatctt
tcatctggcatcctcagatccaaaactttggacagcaatgaacagatcgccgtcactggc
tggtgggttgcccactggagatacatcgaggtcgcgttcacatctaccggcaactggtct
catcttgccgatatcaaagtgatgcaggacttttgtcgcgatgtcatcgagttggcagac
ggcatgcttgcccaggatggtctatttgcatcggcgctgcaagctactacctcgcagaac
gatgtgaagcaggcaaagccgaaagaagaagagctgaccaagatgcaacagcttctgaag
gatcctcagcgtcacctctttggcattgtcaggatgcttcgactgagggatacctacctg
gttgaagtcacggtcaaggttgtggccaagttactgacgagactgcgtgagaattcaatc
gacatccccagcgactctaagaattacgtccaagactcctgcatcaagttatcgacaacc
ggccgctacccagtcactaccaacatgaatgaccaacagcgtgccgagcttctgaaagct
ctgggtgaagatgatgacattgaaatcatccagatccagccagtttctaaggagaagcca
aagaaacagagtttcctcgatgcctggtccaagtccggttcttcaacaccaacgtcccag
gccgttcggtcaaacaaggacgacgttctcgagctcagcagttccgtcgacaagaaaaga
tcaatcttggaccaaatggccgctcgccagaaagcgccgccagccatcccccgcatggcc
gtcaagcccaagcttgagccagtggtcactcaagcatcgaagaacgccctcattgagtcg
cgcaagaaagccaaattggagaaagctaagagagatgccgatgaggttgcaagagttcgc
gctctccggggagccgccaatgtgggtgagggctcggggctaaagggacttagtggtgta
gttggcaaagaacacacaacgcagaagagtcaaatcctggtcgacagcgacgaggaagag
gatgatgattctggagaggaggatctcaacaacctcattaacaagggccaacaaggccaa
aaggctgttgatgaagcccaaagacgtcgcgaacgggcactgctcgaaaagacgcgaggc
ccagtcaagaaggtaaaggtacaacgctctgccaaggatatgcgtgcgcgtttgatcccc
ccgatggatcaacttcatcaagccatcctggaatgggacatcttccacgagggcaatgat
ccgccctcgacctcgtcttcaatggcgattacacgggttgcaagctcgtatgcccaccct
caggagtacaagcagacctttttgggtctcctgatttctgaagcctggcgatcttttgtg
actgccaaagatgagtcgacgtctaagccgtacggactcaagatcgcgtctcgtatgaat
gttgataaattccttgaagtgactgccagcattcccaagactgagagcaaggaaaggctg
ctatcagagggtgacattattttggtgtcaaagagcactgatcctctgacggacaagtct
gaagcccatgctctggcaagaatttggaaaaccacgtacaagaaggaaaggctggaagtg
acataccgcttgaatagcaagaataaccccttgcttgccatcaatgccctcggtgttggc
gctgaactccaagccgtcaagatcaccaacatgacgactattgagcgagagtatgcagcc
cttgagagtctgcaatactacgacctcatgcttgaggttctcaaagccgagccatcgccc
attctgaagtacggcgacgaggctgtcaaaggcgtcatgcagaattaccagctcaaccct
ggtcaggccaaagccattctcggtgctaaggacaacgatggcttcaccttgattcaagga
cctcccggtacgggcaagacgaagacaattgtggccatggtcggctcgctgctcaccggc
aacatccaaccccctggaacggctatcaagcccaagcttcctactcagggccaagccgcc
atgccgaagaagcttctggtatgcgctcccagtaacgccgctgtagacgagctggtgttg
cgtctgaagcagggcgtcaagacgatgaccgggtctttccacaagatcaatgtgcttcgt
ctgggaagaagcgatgcaatcaacgccgccgtccgagacgtcactctcgatgagttggtc
aagaagaaactcgagggagacaccacgcagaacaaagccaaggaggaacgcgacaagatg
cataacgacgcggccaaaatcagagacgaactggcggagctccgacccaaactggacgag
gcgcgcaagaacggtgaccgcaatctttcgctagccctgcagcgagctttcgatcagttg
aagcgtgctcagattaacattggagccaagattgacgatgacaagacgagcggcaacaca
gtcagtcgtgaagccgagattcgacgccggcaaatccagcaagagattcttgatggagcc
caggttctctgcgccacgctcagcggtagtggtcacgagatgttcaagaacctcaacgtc
gagttcgagacggtcatcatcgacgaggcagcgcagtgtgttgagctcagcgccctgatt
ccgttgaagtacggttgcaccaagtgtatcctcgtcggtgacccgaagcagttgccaccc
actgtgctttctcaatccgccgctagatttggatacgaccagagtctgttcgtccgaatg
cagcaaaatcatcctgactatgtccatctcctcgaccgccaataccgtatgcaccccgag
atcagcttgttccccagcttggaattctacgaaggcaagcttgtggacggagaagatatg
agcgcactccgtcgccagccttggcacgcaagcgccctccttggcccctaccggttcttc
gatgtcgagggtacccagtcaaagggcagcaagggtcgctctctggtcaaccactccgag
ttgaaggttgccatgcagctttacgagcggttcaagacggatttcggacgaaactacgat
gtgcgcggcaagattggtatcattacgccgtataaagctcagttgcaagagctgaagtgg
cagttcgcgcgtcgttacggagagtcgatcaccgaggacattgagttcaataccacggat
gccttccagggtcgagagtgcgagattatcatcttctcttgcgtccgagctgatcctacc
ggcggtattggtttcgtcaaggatattagacgtatgaacgtcggtctcacccgtgctaaa
tcctctctgtggattttgggagattctagagccctggtgcagggagagttctggaataag
ctcatcgacaacgccaagcaaagatcactctacaccaagggagatgtcatgtcaatgctg
cagaagccgagcgttctacaggcgttgcccccgtcgccgccgaaacccgcgcagaagaat
gactttgatgctgagatagtggaccagcttcagatcaaagacgtggacttggcagatgtg
gcgcccacggcgcagccccgaaagccgtctcagccggcccagcaaccaccgacaaactac
cccgtcccggagcgtcgatcaggctcctgggagggaaacaaccgaggcgacgcacaccat
tctgccgcccgaaactcggatcggccaccaattatccaatcatctacggcgaagcaagag
tccaagaagagaccatctgatgccaatgaaggacagcgtggcgcgaagaggatggcgacc
gaacagaaccggctgcccaacagaccgccaccgacggggcccaaagccatgatccaggcc
aaggagcccaaggcaccgaagccggcgaaggacccttctgccatggtagccctcggtctg
acaccagctgcacgaccgccggcgatggagacgacggcatcgtcttcgaggacgttgcct
accaactcttcacttccgcagaaccgtaatttgccacagagacctcctggacagggtgga
ccaaacggaccagtcatccacaggaagaagcagaaggccgatcccttcattcagagaaag
cctcacaaacgttag
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integrated database retrieval system
