Colletotrichum lupini: CLUP02_08907
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Entry
CLUP02_08907 CDS
T08561
Name
(RefSeq) ATP-dependent RNA helicase SUB2
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
clup
Colletotrichum lupini
Pathway
clup03013
Nucleocytoplasmic transport
clup03015
mRNA surveillance pathway
clup03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
clup00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CLUP02_08907
09122 Translation
03013 Nucleocytoplasmic transport
CLUP02_08907
03015 mRNA surveillance pathway
CLUP02_08907
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clup03019
]
CLUP02_08907
03041 Spliceosome [BR:
clup03041
]
CLUP02_08907
Enzymes [BR:
clup01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CLUP02_08907
Messenger RNA biogenesis [BR:
clup03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
CLUP02_08907
Spliceosome [BR:
clup03041
]
Complex C
Other components
EJC/TREX
CLUP02_08907
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
CLUP02_08907
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
DUF4844
CMS1
Motif
Other DBs
NCBI-GeneID:
73342898
NCBI-ProteinID:
XP_049145031
UniProt:
A0A9Q8STR1
LinkDB
All DBs
Position
4:complement(join(6023398..6023446,6023504..6024122,6024174..6024561,6024633..6024705,6024757..6024896,6024954..6025096,6025156..6025480,6025628..6025798))
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AA seq
635 aa
AA seq
DB search
MTSPFGGETQPPFLTRKLLTCAARLTLRLQFHVVLGSSTSTSTTAPPSITPSNPAPPLRI
RSLGTFFAVAHQYNGHFFSATSITTPPTIDNMSAEEDLIDYSDEELQTNETAAASNGKKA
DAAAGNAVDKKGSYVGIHSTGFRDFLLKPELLRAIGDCGFEHPSEASVHLASHTKNKKPS
TSPSKKREKKTYREAGVKLDIQVFVRALLANSPAARTLRCSRVHFSRSVAARALAHGGLA
SFVSQSRATRGACDAGARDSGGGDQLDKMASLRRWTGPLHALYVALLGGDIICQAKSGLG
KTAVFVLTTLQQVEPVQGEVSVLVMCHTRELAFQIRNEYNRFSKYMPDIKTGVFYGGTPI
QKDVETIKNKETCPHVIVGTPGRLNALVRDKVLRLGSVRIFVLDECDKMLDQIDMRRDVQ
EIFRATPTQKQVMMFSATLSDDIKPICRKFMQNPTEHYVDEDTKLTLHGLQQYYIKLEER
EKNRKLNELLDDLQFNQVIIFVKSTLRATELDKLLRECNFPSIAVHSGVSQEERIRRYKE
FKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLAISFVS
TDQDQEVLKSIEKRFEVALPEFPKEGIDASTYMAS
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcgccttttgggggtgagactcagccgcctttccttacgcgaaagcttttgacc
tgcgctgcccgcctcacccttcgcctccagttccacgtcgtccttggatcttccacttcc
acatcaactacggcgcctccttccatcacgccctccaaccctgcacctccacttcgcatc
cgcagccttgggacctttttcgccgttgcgcatcagtacaacggccatttcttctccgcc
acttcaataacgacacccccgacaattgacaacatgtctgctgaggaggatctcatcgac
tactccgacgaggagctccagaccaacgagactgcggccgcctccaacggaaagaaggct
gacgctgccgccggtaacgccgtcgacaagaagggcagctatgtcggcatccactcgacc
ggtttccgcgacttccttttgaagcccgagcttctccgcgctattggcgattgcggtttc
gagcatccttcggaggcgtccgtccatctcgcaagccacacaaagaacaaaaagccatcg
acgtcgccatcgaagaagagagagaagaaaacgtaccgagaagcgggagtcaagttggac
atccaagtttttgtacgggcactgctcgcgaattcaccggctgcgcgaacactgcggtgt
tcccgagtgcacttcagtcggtcggttgctgctagagctttggctcacggcggtctggct
tcttttgtatcacagtcgcgagcgacacggggcgcatgcgacgccggcgctcgcgattct
ggaggaggagaccaactcgacaaaatggcttctttgcgcagatggacgggccctttgcac
gccctctacgtcgctctcctcggtggagatatcatctgccaggccaagtctggtctcgga
aagacagccgtcttcgtcctgaccaccctgcaacaagttgagcccgttcagggcgaggtc
tccgtgttggttatgtgccacactcgtgagcttgccttccagattcgcaacgagtacaac
cgtttcagcaagtacatgcccgatatcaagactggtgtcttctacggcggtacccccatc
cagaaggatgtcgagacgatcaagaacaaggagacctgcccccatgtcatcgtgggcacc
cctggccgacttaacgcgttggtccgcgacaaggttctccgcctcggcagcgtccgcatt
ttcgtcctcgacgagtgcgacaagatgctcgaccagatcgacatgcgccgtgacgtccag
gagatcttccgcgctacccccacccagaagcaggttatgatgttctcagccaccctgtcc
gatgacatcaagcccatctgcagaaagttcatgcagaaccctaccgagcactatgtagac
gaggacaccaagctcaccctgcacggtcttcagcaatactacatcaagctcgaggagcgc
gagaagaaccgcaagctcaacgaactcctggacgaccttcagttcaaccaggtcatcatc
ttcgtcaagagcaccctgcgtgcaaccgagctggacaagttgctgagagagtgcaacttt
ccctccatcgccgtccactccggcgtcagccaggaggagcgtatccgccgttacaaagag
ttcaaggagtttaacaagcgtatctgcgttgctaccgatgtcttcggcagaggtattgat
atcgagcgtatcaacctggccatcaactacgatctgcccgccgatgccgactcgtacctg
cacagagtcggtcgtgccggtcgtttcggtaccaagggtcttgccatctcctttgtgagc
actgaccaggaccaggaggttctcaagtctattgagaagcgcttcgaggttgctcttcct
gagttccccaaggagggtatcgatgccagcacctacatggcctcttaa
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