Colletotrichum lupini: CLUP02_10125
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Entry
CLUP02_10125 CDS
T08561
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
clup
Colletotrichum lupini
Pathway
clup03020
RNA polymerase
clup03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
clup00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CLUP02_10125
09124 Replication and repair
03420 Nucleotide excision repair
CLUP02_10125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
clup03021
]
CLUP02_10125
03400 DNA repair and recombination proteins [BR:
clup03400
]
CLUP02_10125
Enzymes [BR:
clup01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CLUP02_10125
Transcription machinery [BR:
clup03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
CLUP02_10125
DNA repair and recombination proteins [BR:
clup03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
CLUP02_10125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_5
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
Motif
Other DBs
NCBI-GeneID:
73344111
NCBI-ProteinID:
XP_049146245
LinkDB
All DBs
Position
5:complement(join(2479169..2479331,2479386..2480614,2480672..2483056))
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AA seq
1258 aa
AA seq
DB search
MADYDDYDYDGYVEEDDTSITPEDCWTVISSFFESKGLVSQQVDSFDEFTSSTVQELIDE
YSQITLDQPNPMSDSDKVIALRRYEVKFGTVMVSRPSITEADGKVTTLLPYECRDRNLTY
ASPLYVKITKKVSIAVEKPVPLNELDEEQQDELANTGEHPTKLEWEEEESGEDYGADKNK
SDDMKDMIFIGRMPIMVKSKICHLSSEQEDDLFMLNECPYDQGGYFIINGSEKVLIAQER
SAANIVQVFKKAQPSPYSYTAEIRSALEKGSRLISSMMLKLYSKGDAAKGGYGQTIHCSL
PYVKADLPIAIVFRALGVVSDEDILNHICYDRNDSQMLEMLRPCIEEAFCIQDREVALDF
IGKRGSNHNIPREKRVRTAKDILQKETLPHISQSEGSETRKAFFLGYMVHKLLQCALGRR
DTDDRDHFGKKRLDLAGPLLAKLFRNIVRRMNQELSGHLKRCVESNRQFSLTLGVKPQTL
SNGLKYSLATGNWGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQ
LHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGTPAEPIIDYMIQRGMEVLEEYEPLR
YPNATKVFLNGVWVGVHQDPRILVPDVQGTRRRNVISHEVSLVRDIRDREFKIFSDAGRV
MRPVFVVEQGTNGIVAQGSLVLQKATVNEMREQQENPPDNPADKITWESLAHSGVIEYLD
AEEEETAMICMTPEDLEIYRLQKQGQVVEDNTDGPNSRLKTKINPTTHMYTHCEIHPSML
LGICASIIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRS
MEFLKFRELPAGQNAVVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYTDCEKRVGI
NLVEQFEKPFRSDTLRLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTSPISPDNAEMGQR
TVQHVKRDASTPLRSTENGIVDQVIVTTNQDGLRYVKVRVRTTKIPQIGDKFASRHGQKG
TIGVTYRQEDMPFTGEGITPDIIINPHAIPSRMTIAHLIECLLSKVSTLKGMEGDATPFT
DVTVDSVSQLLRDQGYQSRGFEIMYNGHTGRKLRAQVFFGPTYYQRLRHMVDDKIHARAR
GPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAASFLKERLFEVSDAFRVHVCEICGL
MTPIANLSKQSFECRPCKNKTKIAQIHIPYAAKLLFQELQSMNIAARMFTNRSGVSIR
NT seq
3777 nt
NT seq
+upstream
nt +downstream
nt
atggccgactacgatgactacgactacgacgggtacgtcgaagaagacgataccagcatc
acgcccgaagactgctggaccgtcatctcttccttcttcgagtcgaagggtttggtttct
cagcaagtcgactccttcgacgaattcacctcttcaaccgtccaagagctcatcgacgag
tactcccaaatcaccctagaccagccgaatcctatgtcagacagcgacaaggtcatcgcc
ctccgtcggtacgaagtcaaatttggcactgtcatggtatctcgtccatccatcaccgaa
gctgatggtaaagttacgacattacttccctacgaatgccgcgaccgcaacctcacttac
gccagtcccctctatgttaagatcaccaagaaggtctcgattgcggtagagaaaccggtt
ccgctgaatgagctcgatgaggaacagcaggacgaacttgcaaatactggcgagcaccct
accaagttggagtgggaagaggaggagagcggcgaggattatggcgccgacaaaaacaag
tcagacgacatgaaggacatgattttcatcggtcgcatgcccattatggtcaagtctaag
atttgccacttgagtagcgagcaggaggatgacttgttcatgctaaacgagtgtccttac
gatcagggaggctacttcatcatcaacggtagtgaaaaggtcctcattgctcaagagcga
tcggccgccaacattgtccaagtcttcaagaaggcccagccgagtccatactcttacaca
gctgaaatccgcagcgctctcgagaagggctctcgactcatttcatctatgatgctgaag
ctgtacagcaagggcgacgcggcaaagggcgggtacggtcagactatccactgcagtctg
ccctatgtcaaggctgatctgccaatcgccatcgttttccgagctctgggtgtggtatcc
gacgaggatatcctcaatcatatttgctatgatcgaaatgatagccagatgctcgagatg
ttgcggccatgcatcgaggaagctttctgtatccaggacagagaggttgcccttgacttt
atcggcaagcgtggcagcaaccacaacattcccagagagaagcgtgtgagaactgctaaa
gacattcttcaaaaagaaactctgccgcatatctcccagagcgaaggcagtgagacaaga
aaggcgttctttttgggatacatggttcacaagctgctccaatgcgccttaggtcggcgc
gataccgacgatcgtgatcactttggcaaaaagcgccttgatctcgccggcccccttctc
gccaagctgttccgcaacatcgtccgccgcatgaaccaggagttatctggccatctcaag
cgctgtgtcgagtctaacaggcaattcagtctcactctcggtgtgaagccgcagactctt
tcaaatggattgaagtactcgttggcgactggcaattggggagatcagaagaaggccgcg
agctcgacggctggcgtgtctcaggtattgaaccgctatacttttgcgtctacgctatcc
catcttcgtcgcacaaatacgcccattggtcgtgacggcaagctggcaaagccccggcaa
cttcacaacacgcactggggtttggtttgcccggctgagacgccggaaggccaagcatgt
ggtctcgtcaagaacttgtctctcatgtgttatgtcagtgtcggtacacccgccgaaccc
attatcgactacatgatccagcgaggcatggaggttcttgaggagtacgagccactgagg
tatcccaacgccaccaaggtcttcctgaatggtgtctgggttggcgtgcaccaagaccca
agaattttggttcctgatgttcagggcactcgtcggcgaaacgttatttcccacgaagtg
tcgctcgtccgtgatatccgagaccgcgagttcaagatcttttccgacgccggcagagtc
atgagacctgttttcgttgtagagcaaggtaccaacggcatagtagctcagggatcgctc
gtgctgcaaaaggcaacggtcaacgaaatgcgcgagcaacaggagaaccctccagataac
ccggctgacaagattacttgggagtcccttgcccacagcggtgttatagaatatctcgat
gctgaggaagaagagacagccatgatttgcatgacgcccgaggatctggaaatctacaga
ttgcagaagcaaggtcaagtggttgaggacaataccgatggccccaatagccgtctgaag
accaagattaatcccacaacacacatgtacactcactgcgaaatccaccccagcatgctg
ttaggaatttgcgccagcatcattcccttccccgatcacaaccagtcacctcgtaatacc
taccagtccgccatgggcaagcaagccatgggcttcttcttgacaaactactcacgcaga
atggacacgatggccaatattctctactaccctcaaaaaccgcttgccaccacgcggtcc
atggaattcctcaagttcagagagcttccagccggacagaacgccgtcgtcgctattgcc
tgttactctggttacaatcaggaagattccgtgatcatgaatcagagcagcatcgatcgt
ggcctgttcaggagtctattcttcaggtcgtacactgactgcgagaagcgcgtgggtatc
aatcttgttgagcagtttgagaaaccgttcagaagcgataccttacgtttgaagcatggc
acctacgacaagctcgatgatgatggcatcgtagcaccgggagttcgtgtctcgggtgaa
gatatcattatcggaaagacgtcgcctataagcccggacaacgctgagatgggccagcga
acggtgcagcatgtcaagcgcgacgcctccaccccactcagaagtacggaaaacggtatt
gtagaccaggtcatcgtgacgaccaaccaagacggcctccgttacgtcaaggtccgcgtc
agaacaaccaagattccacagattggtgataaatttgcctcacgtcacggccagaagggt
accattggtgtcacttatcggcaagaagatatgccctttacgggcgagggcatcacacca
gacatcatcatcaatcctcacgcaattccgtctcgtatgaccattgcccacttgatcgag
tgtttactcagcaaagtctcgacgttaaagggaatggagggcgacgccacccctttcaca
gatgtgacagtcgactcagtctcgcagctcctccgagatcaaggatatcaatcgagagga
ttcgagatcatgtacaatggccacactggcaggaagctgcgagcccaggtcttctttgga
ccgacttactaccagcgtctgcgccacatggtggacgacaagattcacgctcgtgcgcgt
ggacctgttcagatcatgaccaggcaacctgtggagggtcgtgctcgtgatggaggtctt
cgtttcggagagatggagcgtgattgcatgattgctcatggcgccgcatctttcctcaag
gagagacttttcgaggtctcggatgctttccgagttcatgtttgcgaaatttgtggcctg
atgacgcctatcgcaaacctctcgaagcaatcgttcgagtgtcggccgtgcaaaaacaag
acgaagattgcacaaatccacattccttacgcagctaagcttctgttccaggagctgcag
tcaatgaacatcgccgcccgcatgtttaccaacaggtccggagtctccatccgataa
DBGET
integrated database retrieval system
