Colletotrichum lupini: CLUP02_10269
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Entry
CLUP02_10269 CDS
T08561
Name
(RefSeq) zinc knuckle
KO
K12597
protein AIR1/2
Organism
clup
Colletotrichum lupini
Pathway
clup03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clup00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CLUP02_10269
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clup03019
]
CLUP02_10269
03016 Transfer RNA biogenesis [BR:
clup03016
]
CLUP02_10269
Messenger RNA biogenesis [BR:
clup03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
CLUP02_10269
Transfer RNA biogenesis [BR:
clup03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
CLUP02_10269
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AIR2-like_ZnK4
Motif
Other DBs
NCBI-GeneID:
73344255
NCBI-ProteinID:
XP_049146390
UniProt:
A0A9Q8WID6
LinkDB
All DBs
Position
5:2886968..2889277
Genome browser
AA seq
769 aa
AA seq
DB search
METSESAAQAVPVLSTGNDAKRVSKKRSLEDVEQGDMMPNGSQSHRASSHEPEAKRARTE
QIGQSVEQDVSMDSEGADEGELEEDGEVLPSEPESEDQRVVAAESGGNAGSRTRSKVSSS
GEESDAGSKRTTRSMSAAASGPSQVGWNQGITSQIRTSLGGPKTKAAPVPAKVSIAEEES
APAATPASDSQEAPAPTEATEPAQPAQPASKEPKISRQQRRAEAAALEKEKAQNEKSAFV
YEGMTFFQPNKKTLLQPKGNNLGSGVWRSKFKSWAQSFISRNSEQEQLLTPEILVAALQD
YIAHRAQWNKKRQSPAATTESRKPETRTDMASILASAVKKPTRQLGSEESPLIIHDDEDE
VDDDIQEVSPPSGARRESSDQHSATTPSQNDVVEVVDDEDEEMEEEQGEPGQAIMTEEED
LEQQRKYFPGLADTAQICVYCATLGHTSMACPNTRCKFCEHTDHFSWNCPTRERCTKCRQ
LGHGKTQCKEKLIHLDEEGMECALCGSQAHQENECERVWRSYKPLRMIKKVKPFPAFCSF
CGNESHYSSDCHLNRDRPKSETWTLKNRHLYVDKNATDGPISDFASQPQNPKFAPLSIKG
SAAKRNHIFYPDSDGSEEGEFISQKVKPRAPLGNIQMSTNLQINAGNFGPPPQTQSNGRG
GQQRNGWSAQQPPLPPGPPPPGPPPQGSYSRMSRSHNNQSRQPANGLPPKPPAPQSQQHG
RAGPNPPKKQRTRNHSGNSNAGAAQQQQNGGGSAASRRRGKNKRGGKQG
NT seq
2310 nt
NT seq
+upstream
nt +downstream
nt
atggagacatcagagtcagcagcacaagccgttccggtccttagcactgggaacgatgcc
aaacgagtatcgaagaagcggtcgctggaagacgttgagcagggagatatgatgcccaac
ggatcacaatctcatcgggcctcatcgcatgagcccgaggccaagcgagcgagaacggag
caaatcggtcaatcagtcgagcaggatgtgtcaatggactcggaaggcgccgatgagggc
gagctggaggaagacggagaggttctaccttccgaacccgaatccgaagaccagagggtc
gtcgccgcagagagtggaggaaacgccggatctcgcacgcgttcaaaggtgtcttcttcg
ggggaagagtcagatgcaggcagcaaacggacgacccgttcaatgtcggcggcggcgagt
ggcccatctcaagttggatggaatcaaggcatcacgtcccagatccggacatcacttgga
gggcccaagaccaaggccgcaccggtgccggccaaggtctctattgctgaggaggaaagc
gcgcctgctgccacacctgcatccgattctcaagaagcgcctgcaccgaccgaggcaacc
gagccagcccaacctgcccaaccggcatcaaaggagcccaaaatctctcgacagcagcga
agagccgaagccgccgctctcgagaaagaaaaggcacaaaatgaaaagagtgctttcgtc
tatgagggtatgactttcttccaacccaacaagaagacgcttttgcaaccaaagggaaac
aacctaggcagtggagtgtggagatccaagtttaagagctgggcccagtcattcatcagc
cgcaatagcgagcaggagcagctgctcacgcccgaaattctcgtcgccgctctgcaggac
tacattgcgcatcgggcgcagtggaataagaagaggcagtccccggccgccaccaccgag
tcacgcaagcccgaaacgaggactgacatggcctccatcctggcgtcggctgtgaagaag
cctacccgccagctaggatcggaagagtcgcccctgatcatccacgacgacgaggacgag
gtcgacgacgacattcaagaagtatcacctccttccggtgccagacgggagtccagcgat
cagcattcggctacaacaccatctcaaaacgacgtggtggaagtggtggacgacgaggac
gaggagatggaggaagagcaaggtgaacctggacaggcgatcatgaccgaggaggaggac
ctggagcagcagcgaaagtacttccctggcctggcagacaccgcccagatctgcgtgtac
tgcgcaactctcggacacacctcgatggcttgccccaacactcgttgcaagttctgcgaa
cataccgaccacttttcgtggaactgccctacacgcgagaggtgcactaagtgtcgccag
ctcggccacggcaagacccagtgcaaggagaagctcattcacctggatgaggagggcatg
gagtgtgccctatgtggctcccaggctcatcaggagaacgagtgcgagagagtctggcgg
tcatacaagcctttgaggatgatcaagaaggttaagccgttccctgccttctgcagcttt
tgcggaaacgagagccactactcttccgattgtcatctgaaccgtgacagaccgaaaagc
gaaacgtggacgctcaagaacagacacctctacgtcgacaagaacgcaaccgatggcccg
atcagcgacttcgctagtcagccccagaaccccaagttcgcccctctctcgatcaagggc
tctgcagccaagcgaaaccacatcttctaccccgatagcgacgggtcggaggagggcgag
ttcatcagccagaaggtgaagccgcgtgctccactcggcaacatccagatgtcgaccaac
ctccagatcaacgccggcaactttggaccaccaccgcagacgcagtcaaacgggcgcggt
ggccagcagcgaaatgggtggtcagcgcagcagcctcccctccctccaggacctccacct
ccaggtccgccaccacagggctcgtactcgcgaatgtctagaagccacaacaaccagtcg
cgccagccggcgaacggtctgccccccaagcccccagcaccgcagtcgcagcaacacggg
cgagcaggaccgaatccgccgaagaagcagaggacaaggaaccattccggaaactccaat
gcgggagccgcgcagcagcagcagaacggtgggggctcggcggcatcgcgccgaaggggc
aagaacaaacgcggtgggaagcaaggatga
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