Colletotrichum lupini: CLUP02_10670
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Entry
CLUP02_10670 CDS
T08561
Name
(RefSeq) replication factor-a protein 1
KO
K07466
replication factor A1
Organism
clup
Colletotrichum lupini
Pathway
clup03030
DNA replication
clup03420
Nucleotide excision repair
clup03430
Mismatch repair
clup03440
Homologous recombination
clup03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
clup00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CLUP02_10670
03420 Nucleotide excision repair
CLUP02_10670
03430 Mismatch repair
CLUP02_10670
03440 Homologous recombination
CLUP02_10670
03460 Fanconi anemia pathway
CLUP02_10670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
clup03000
]
CLUP02_10670
03032 DNA replication proteins [BR:
clup03032
]
CLUP02_10670
03400 DNA repair and recombination proteins [BR:
clup03400
]
CLUP02_10670
Transcription factors [BR:
clup03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
CLUP02_10670
DNA replication proteins [BR:
clup03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
CLUP02_10670
DNA repair and recombination proteins [BR:
clup03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
CLUP02_10670
MMR (mismatch excision repair)
CLUP02_10670
DSBR (double strand breaks repair)
HR (homologous recombination)
CLUP02_10670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
CDC24_OB3
RADX
Motif
Other DBs
NCBI-GeneID:
73344654
NCBI-ProteinID:
XP_049146789
UniProt:
A0A9Q8SX68
LinkDB
All DBs
Position
5:complement(join(4225878..4225974,4226027..4227463,4227526..4227780,4227842..4227879))
Genome browser
AA seq
608 aa
AA seq
DB search
MDVESKITKGALDAIFNDPEGANTKFPVPVLQCLQIKPLAAQAGGNAERYRIVLSDVSNY
VQCMLATQVNHVVHDNKLVRNCIVRITQYQANSVKGKNILIILGLEVVEQFGTPDKLGEP
QAFEAKPPAAANTTIGGQNFYGVKQEETKPTPKPQSIPTRSAGGATGQHGSNNIYPIEAL
SPYAHKWTIKARVTQKSDIRTWHKPSGEGKLFSVNLLDESGEIKATGFNDQCDQYYDLLQ
EGGVYYISNPCKVQLAKKQFTNLPNDYELTFERDTQIEKAEDQSSVPQVRFNFCNIQELQ
EVEKDATVDVIGVLKEVAEVSQIVSKSTGKPYEKRELTLVDDTNYSVRVTIWGKSATNFD
AKPESVVAFKGTKVSDFGGRSLSLLSSGTMSIDPDIPDAHRLKGWYDSSGRNDTFSSHNN
MASMGNATGRKDQDKSILQVKEENLGMENQDYFNLKATIVYIKQENFAYPACSNEGCNKK
VTDMGDGTWRCEKCDVAHPKPEYRYIMSINVCDHTNQLWLSCFDDVGRVIMGMSADDLMA
LREEDETKMAQAFEQANCTKLNFRCRAKMDTFGEAQRVRYQVLSAGQIDYKAEGAKLADL
IKQFGISS
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atggatgtcgaatcgaagatcacgaagggagccttggacgccatcttcaacgaccccgaa
ggtgccaacacgaaatttccagtcccggttcttcagtgcctgcagatcaagcctttggcc
gcacaagcaggaggcaacgcggagagataccggattgttctcagcgatgtgagcaactat
gttcagtgcatgttggctacgcaggtcaaccatgttgtccacgacaacaagctggtcaga
aactgcatcgtgcggattactcagtaccaagcgaactcggtgaaggggaagaacattctg
attatcctcggcctcgaggttgtcgagcagttcggcacaccagacaagctcggcgagcct
caagcctttgaagcgaagcctcctgcagcagcaaacacgaccatcggcggacagaacttc
tacggtgtcaagcaagaggagaccaagcccacaccaaagcctcaatcgatacccacgcgc
tctgctggaggtgccaccggccagcatggaagcaataacatctaccctatcgaagccctc
tctccctacgctcataagtggaccatcaaggctcgcgtcacgcaaaagtcagacatccgg
acatggcacaagcctagtggcgagggcaagctgttcagtgtcaacttgcttgacgagagt
ggcgagatcaaggcaaccggcttcaacgaccaatgtgaccaatactacgatctgcttcag
gagggaggtgtctactacatctccaacccttgcaaagtccaacttgccaagaagcaattc
acaaacctgccgaacgactacgagctcactttcgagcgcgatacccagatcgagaaggca
gaggatcagagtagtgtgccgcaggtgcggttcaacttctgcaacattcaagagcttcag
gaagtcgagaaggatgcgaccgttgacgttattggcgttttgaaggaggtcgctgaggtg
tcccaaatcgtctccaagtcgactggcaagccttacgagaagcgtgagctcacgttggtc
gacgacacgaattactcagttcgcgtcaccatctggggcaagagcgctactaactttgac
gccaagcctgagtctgtcgtggctttcaagggtactaaggtgtctgactttggtggtcgc
agtctcagcctgctttcttccggcacgatgtccattgacccggatattcctgatgctcac
cgtctgaagggctggtatgactcatctggtcgcaatgataccttcagcagccacaacaac
atggccagcatgggcaatgccactggtcgcaaggaccaggacaagtccattctccaggtg
aaggaggagaacttgggcatggagaaccaagactacttcaacctcaaggctaccattgtc
tacatcaagcaggagaactttgcttatcccgcatgtagcaacgagggctgcaacaagaag
gtgactgacatgggagatggtacctggcgttgcgaaaagtgcgatgttgcccacccgaag
cccgaatatcggtacatcatgtctatcaacgtgtgcgatcacaccaaccagctgtggctc
agctgcttcgatgatgtcggtcgtgtcatcatgggcatgtcggcagacgatcttatggct
ttacgcgaggaggatgaaacgaagatggcacaggcattcgagcaagcgaattgcaccaag
ttaaacttccgatgtcgtgcgaagatggacaccttcggcgaagctcagagggtacgctac
caggtcttgagcgcagggcagatcgactacaaggccgagggagctaagcttgcggatctc
attaagcaatttggtatcagctcgtaa
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