Colletotrichum lupini: CLUP02_10728
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Entry
CLUP02_10728 CDS
T08561
Name
(RefSeq) SH2 domain-containing protein
KO
K11292
transcription elongation factor SPT6
Organism
clup
Colletotrichum lupini
Brite
KEGG Orthology (KO) [BR:
clup00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
clup03021
]
CLUP02_10728
03036 Chromosome and associated proteins [BR:
clup03036
]
CLUP02_10728
Transcription machinery [BR:
clup03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
CLUP02_10728
Chromosome and associated proteins [BR:
clup03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
CLUP02_10728
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
HTH_44
HHH_7
YqgF
Spt6_S1
Tex_central_region
SPT6_acidic
HHH_9
SH2
HHH_3
PSD4
DUF7800
Motif
Other DBs
NCBI-GeneID:
73344711
NCBI-ProteinID:
XP_049146846
UniProt:
A0A9Q8SXA3
LinkDB
All DBs
Position
5:complement(join(4424793..4425055,4425112..4428739,4428791..4428964,4429022..4429192))
Genome browser
AA seq
1411 aa
AA seq
DB search
MSASMRDFVDGEAELDDEDEESLDEDADPRSARRRNAAPEDSSEEEEDDEDEEEARKIRE
GFIVDEDEEEEVGEDEDAHERKRKREHRDREEEERLDEDDLELIGEQIERRAPTQPKFKR
LKRGHRDEDDRGPERRGLEDMFSDDDEEANDQKPYGRSNYRPQADEFEDFIEEDYPEDED
ERARQQEDAEVARPRDRGVGGVVDTSGLDKDALEDMEAIFGNGEDYEWALQMEEEQEDRE
REEQVIELKDVFEPSQLKEKLLTDEDNQIRFTDEPERFQLDRKPFKHLQISAEQFKEEAR
WIAGLMWPKKLLQSELHGPFTKAIGKVLEFFVVDDVEVPYVFQHRKDYLIHAKKTKNPDH
RDDPDAPEWIVSADKLLTQDDLWRILELDIKFRSLIEKRNALEKTLENLKSAASIKDDVL
EDMIPQAATMEELQDLQDYLHFQYTNELKDLSFMNGNGNQMKRPGSKSNLVDRVRRSKAI
GFVRAYGITPDRFAQNTLREGNKVWADDDSQLPDDLADSLTDEEFQTGDTVMYAARQMYA
EELFVNPRMRKHFRVNFYQMGEISCRRTEKGLKKIDESHPFYEVKYLINQTIADVARQPD
LYLKMMKAEEEGLIEVKLTLENDEGFKRSLRQEFISDNYSELADRWNDERQKVLDLIVPR
LSKIIAKGVKESLRTACQEEVLKACREEYSKRLDQAPYKPKGMILGTLPRIITLSNGMAD
PARDPTLWASVEEDGRVIEQGKLGNLARDERAREEFVEIVNRRRPDAIGISGWSADTQKL
VRDLESLISEKGLMGPEFDDPELGEYRTEPLEVIVVNDEVARLYKDSPRAVAEHPTLSSL
TRYCIALAHYMQNPLKEYAALGKDIASLAFHPCQNLLPQEKLLKHLESAMVDMVNLCGVN
INEAVGDSYTANLLPYVAGLGPRKATSVIKAINANGGAVGSRDELVGDPDSGKLPVVGPR
VWNNCASFLFIDYDATNPASDPLDNTRVHPEDYELGRKMAADALELDEEDVKAETDHNGP
GAIVRKLFKEDEQEKVNELILEEYAEQLERNYSQRKRATLETIRAELQAPYEELRRNFSS
LGPNEIFTMFTGETKDTLAQGMIIPVNIRVVKDDFAIVKLDCGIEGRIESHDGPDGVRVR
GLLTTGQTVQAKVLEVNYKDFLAKLSAREAEVKRPYKRQLYHGHGQWDERLEAADKEELR
EKDKTTGRTQRVIKHPLFKPFNGLEAEQWLGTQAAGEVIIRPSSKGNDHLAITWKVADGV
FQHVDVLELQKETEFSVGKLLRVGGKFTYKDLDELIHEHIEAMSRKVDEMMQHEKFEKRS
KTDLEKWLTTYIDANPNRSAYAFCIDPKHPGYFWLCFKASRGSRVNSWPVRVIPGGFELL
KQAYPDMRALCNGFKIRYQTEITKMQKGGGR
NT seq
4236 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcctcaatgcgggatttcgtcgacggcgaggccgagctcgatgatgaggatgag
gagtctctggatgaggatgccgaccctagatctgcgcgcagaagaaatgcggcccccgag
gactcctccgaagaggaagaggacgatgaagatgaggaggaagcgcgcaaaattcgcgag
ggatttatcgtcgacgaagatgaggaagaggaagtaggtgaggacgaagatgctcacgag
cgaaagcggaagcgagagcatcgcgacagagaagaagaagagcggctggatgaggatgac
ctggaacttatcggggaacaaatcgagcgcagagcaccaacacagcctaaattcaagcgt
ctcaaacgaggacatcgggacgaggacgaccgtggccccgagcgacgcggcttagaggac
atgttctccgatgacgacgaggaagccaacgatcaaaaaccctacggccgatcgaactac
cgcccccaggccgacgagttcgaagacttcattgaggaagattatccggaggatgaggac
gaacgagcgcgtcagcaggaagatgccgaagtcgctcggccccgcgacagaggagttgga
ggcgtcgtcgacacttccggccttgataaagacgccttggaggacatggaggcaatcttc
ggtaatggcgaggattacgagtgggccctccaaatggaagaagagcaagaagaccgcgaa
cgcgaagagcaggtcattgagctcaaggacgtgtttgagccttcacagttgaaggagaag
ctcttgaccgacgaggacaaccagatccgattcacagacgagcctgaaagattccagctg
gaccgaaaaccgttcaagcacttgcaaattagcgctgagcagttcaaggaagaggcccgg
tggattgcgggtttgatgtggcccaaaaagctgctccagtccgaactacacggacccttc
accaaggcgattggcaaggtcctcgagttctttgtcgttgacgacgttgaggtcccctac
gtctttcagcatcgcaaggattacctgatccatgccaagaagaccaaaaatcccgaccat
cgtgacgaccctgacgcccctgaatggattgtcagcgcagacaagcttcttactcaggac
gacttatggcgaattttggagcttgatatcaagttccgctcactgatcgaaaagcggaac
gctctggaaaagacgctcgagaacctcaaatctgctgctagcatcaaggacgatgtactc
gaagatatgattccccaagctgcgaccatggaagaactgcaagatttgcaggactacctc
cacttccagtacaccaacgagctcaaggatttgtctttcatgaacggcaatggcaatcag
atgaagcgcccaggctccaaatcaaatcttgtcgacagagtcaggaggagcaaggctatc
ggttttgtccgtgcctacggtatcactccggatcggttcgcccaaaacactcttcgcgag
ggcaacaaggtttgggccgacgacgacagccagcttcctgacgacctcgccgactccctc
acggatgaagaattccaaaccggtgatactgtgatgtacgctgctcgccagatgtacgca
gaggagctgtttgtcaaccctcgtatgcggaagcacttcagagtcaacttctatcagatg
ggcgaaatcagctgtcgccggacagagaagggtctgaagaagattgacgagtcgcatcca
ttctacgaggtcaagtatctcatcaatcagacaatcgccgacgttgctcgccagccagat
ctgtacctcaagatgatgaaggccgaggaagagggtctcatcgaggttaagctgacattg
gagaacgacgagggctttaagcgctcgttgcgccaagagttcatttcagacaactacagt
gaactcgcggatcgatggaacgatgaacgtcagaaggtacttgatctcattgttccccgg
ctttctaagattattgccaagggcgtcaaggagtctctccggactgcatgccaagaagaa
gttctcaaagcctgccgcgaagaatattcaaagaggctcgatcaagcgccatacaagccc
aagggtatgattcttggcacactgccccgaatcatcactctgtccaacggaatggccgat
ccagctcgcgaccctacactctgggcttctgttgaggaagatggccgggtcattgagcag
ggaaagctgggcaatctagctcgtgacgagcgagctcgcgaagaatttgtcgagatcgtc
aacaggcgccgcccggatgccatcggtatcagcggctggtctgcagatacgcagaagctt
gtgagagacctggaaagtctaatcagcgagaagggcttgatggggcccgagttcgatgac
cctgagcttggggagtatcgcactgagcctctcgaagtcatcgtggtaaatgacgaggtg
gctcgtctctacaaggacagccctagagcagtcgcagagcaccctactctcagttcactc
acaagatattgcatcgctttggcgcactacatgcaaaacccactcaaggagtatgcggct
cttggtaaagacattgcatcgctagctttccacccttgtcaaaacctgctgccccaagag
aagctactcaagcacctcgagtccgcgatggttgacatggttaatctgtgtggtgtcaac
atcaacgaggccgtgggcgattcttacacagcgaacctcctgccctatgtcgccggtctc
ggcccccgaaaggccacaagcgtcatcaaagccatcaacgcgaacggaggagctgtcggc
agtagagatgagctggttggcgaccccgacagtggcaagctgccagttgtgggcccaaga
gtctggaacaactgcgccagtttcctcttcatcgactacgatgcgaccaaccccgcctca
gacccccttgacaacacccgtgttcacccagaggactacgagctgggtcgcaagatggca
gctgacgcccttgaacttgatgaagaggacgtcaaagcggagacggatcacaatggacct
ggcgctattgttcgaaaactctttaaggaagacgaacaagagaaggttaatgagcttatc
ctcgaggaatatgcggagcaacttgagcgtaactacagccagcggaagcgcgctacgctc
gagacaattcgggctgaacttcaagccccctacgaggagttgcgcagaaacttctcaagc
ctcggtccgaacgagattttcacaatgttcactggcgagaccaaggacacactcgctcag
ggcatgatcatccccgtcaacatccgagtggtgaaagatgacttcgccatagtgaagctt
gactgcggtatagagggccgcatcgagtcgcacgacggccctgatggtgttcgcgtcaga
ggtcttctcacgacagggcagacggtgcaagccaaggttcttgaggtaaactacaaggac
ttcttggccaagctttctgcaagagaagccgaagtcaaacgcccttacaagcgtcaatta
taccatggccatggccagtgggacgagagactggaggcagctgataaggaagaactccgc
gaaaaggacaagaccactggacgcacccagagagtcatcaagcacccgctgttcaagccg
ttcaacggattggaagctgagcaatggcttggtacccaagccgccggagaggtcatcatt
cgaccttcctcaaaaggtaacgaccatctggctatcacctggaaggtcgccgatggtgtt
ttccaacatgtcgacgtgcttgagctccaaaaagagacggagttttccgtcggcaaactt
ctcagggttggtggcaagttcacctacaaggatctggatgagttgatccacgaacacatc
gaggctatgtctcgcaaggtggatgagatgatgcagcatgagaagttcgagaagcggtcc
aagacggatcttgagaaatggctcactacatacattgatgccaatcccaaccggtccgct
tatgcgttctgtatcgaccccaagcatcccggttacttctggctttgcttcaaggcgagt
cgtggatctcgtgtcaactcgtggcctgttcgcgttattccgggtggcttcgagttactg
aagcaggcttaccctgacatgagagcgctgtgcaacggcttcaagatccgttaccagacc
gaaatcaccaagatgcagaagggcggtggtagatag
DBGET
integrated database retrieval system
