KEGG   Colletotrichum lupini: CLUP02_12527
Entry
CLUP02_12527      CDS       T08561                                 
Name
(RefSeq) WD domain-containing protein
  KO
K12880  THO complex subunit 3
Organism
clup  Colletotrichum lupini
Pathway
clup03013  Nucleocytoplasmic transport
clup03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:clup00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CLUP02_12527
  09122 Translation
   03013 Nucleocytoplasmic transport
    CLUP02_12527
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:clup03019]
    CLUP02_12527
   03041 Spliceosome [BR:clup03041]
    CLUP02_12527
Messenger RNA biogenesis [BR:clup03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     CLUP02_12527
Spliceosome [BR:clup03041]
 Complex C
  Other components
   EJC/TREX
    CLUP02_12527
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    CLUP02_12527
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR5 WD40_CDC20-Fz Beta-prop_WDR3_1st Beta-prop_EML_2 WD40_WDHD1_1st WD40 WD40_Prp19 WD40_Gbeta Beta-prop_WDR3_2nd ANAPC4_WD40 WDR55 Beta-prop_TEP1_2nd EIF3I Beta-prop_RIG_2nd Beta-prop_WDR75_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_Aladin Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_WDR19_1st Beta-prop_EIPR1 WD40_MABP1-WDR62_2nd CFAP251_N Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_1st DSE1_N Beta-prop_TEP1_C Beta-prop_SCAP Beta-prop_WDR35_TULP_N Beta-prop_NOL10_N Beta-prop_HPS5 WD40_RFWD3 Beta-prop_NUP159_NUP214 Beta-prop_WDR41 PAC11 At4g15545_C
Other DBs
NCBI-GeneID: 73346501
NCBI-ProteinID: XP_049148636
UniProt: A0A9Q8T1F0
LinkDB
Position
6:complement(join(3386695..3386858,3386907..3386951,3387005..3387371,3387431..3387669,3387738..3387793,3387875..3387987))
AA seq 327 aa
MVPPRTRLSLSKERFPAFLTNLKSQPYHDPSSSSRGHTLESIGNFGRDRLIGQNATRNPE
KPNVRFSTELKGHSAAIEKVAFNPVKDAELCSVSNDGVVKFWDVRSKTCINEIRGLGDAF
TLVWAPDGQSLVVGNKTDNIFVLSPTQSAPISSHQQPSQTNQIAFDWAGDTIFLTTGEGR
TRILTYPDFKPAFQFKHGDESKEFTLNGHTSSCLTAELQPTGRYLATGGSDSIISLWDTT
DWICQRTITSMIGPVRSISFTFDGNFLVGGSDEGSGLDIRHAESGDHVHTFKTAGPCPVV
AWAPTKYCLAYSDLGVLRIVGVDAEKK
NT seq 984 nt   +upstreamnt  +downstreamnt
atggtgcctcctcgcacaaggctgagcctctccaaggagaggtttccggcttttctgacc
aacctcaagagccagccgtaccacgatcccagctcaagctctagagggcacaccctggaa
tccattgggaactttggtcgcgacaggctcatcggacaaaacgctacgcggaatccggag
aagccaaacgtacggttttcaactgagctaaaaggacactccgctgccattgaaaaggtt
gcattcaacccagtcaaggatgctgagttgtgtagtgtaagcaacgatggagtcgtcaaa
ttctgggacgttcggtccaagacttgcatcaacgagataagaggcttgggagacgccttc
actctagtatgggcgcccgacggacagtctctagtcgttggaaataagacggataatatc
tttgtactgtcaccaacacagtctgcgccgatatcgtcgcatcagcagcccagtcagacc
aaccagattgcttttgactgggccggcgatacgatcttcttgacaaccggcgagggaaga
acacggatcttgacatatcccgatttcaagcctgccttccagttcaaacatggtgatgag
tcaaaggagtttaccctcaacggacacacgtcttcctgcttgacagccgagctacaaccc
acaggacgttatcttgccacgggaggttcggattccataatttctctgtgggacacaaca
gactggatttgccagcgaaccataaccagcatgattggcccagtgcggtctatcagcttc
acctttgatggtaacttcttggtcggaggcagcgatgaaggctctggactggatattcga
catgcagagtcaggagaccacgtccataccttcaagacagctggtccttgcccggttgtg
gcctgggcgccaacgaaatattgtctggcatacagtgatcttggcgttcttcgcatcgtc
ggggtggatgcagagaagaagtga

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