Colletotrichum lupini: CLUP02_12845
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Entry
CLUP02_12845 CDS
T08561
Name
(RefSeq) DEAD/DEAH box helicase
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
clup
Colletotrichum lupini
Pathway
clup03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clup00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CLUP02_12845
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clup03019
]
CLUP02_12845
03036 Chromosome and associated proteins [BR:
clup03036
]
CLUP02_12845
Enzymes [BR:
clup01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CLUP02_12845
Messenger RNA biogenesis [BR:
clup03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
CLUP02_12845
mRNA degradation factors
5'-3' decay
Decapping complex
CLUP02_12845
Chromosome and associated proteins [BR:
clup03036
]
Eukaryotic type
Gene silencing
piRNA pathway
CLUP02_12845
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
NA-iREase2
CMS1
Motif
Other DBs
NCBI-GeneID:
73346815
NCBI-ProteinID:
XP_049148951
UniProt:
A0A9Q8T337
LinkDB
All DBs
Position
6:join(4624526..4624569,4624641..4624713,4624785..4626244,4626486..4626546,4626667..4626885)
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AA seq
618 aa
AA seq
DB search
MAEALADKLKATNLSDGAASDDWKKSLNLPARDNRQQTEDVTNTKGLEFENFQLKRDLLM
GIFEAGFEKPSPIQEEAIPVALTGRDILARAKNGTGKTAAFVIPALEKINPKVSKIQALI
LVPTRELAMQTSQVCKTLGKHLGINVMVTTGGTGLRDDIIRLQDPVHIVVGTPGRILDLA
GKNVADLSECPMFIMDEADKLLSIEFTPVIEQLLQFHPKDRQVMLFSATFPLSVKDFSDK
NMVSPYEINLMDELTLRGITQYYAFVEEKQKVHCLNTLFSKLQINQSIIFCNSTNRVELL
AKKITELGYSCFYSHAKMAQQARNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFD
FPKNAETYLHRIGRSGRYGHLGLAINLINWDDRFNLYNIEKDLGTEIQPIPASIDKSLYV
YENPESIPRPISNFRTGQPSQGQPQQQQHQQPGQIQGQQLPLQGGPAPGNWQTQQPQQGQ
QNGYQGGGRGRGRGRGGYRGQNRGGYGGRGRGQGQGQGHPQPQGQIPIRLVAKQQKLRHI
FANFWPNEQDDRLSHRKKQTSTTGRDVWRQTSHHTPGMEITRSHLIMSCASLTTAFGGNK
RLKRYQPGTAFAWMAGHI
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atggcggaagcactcgcagacaagcttaaggcaacaaacttgagcgatggcgccgcatca
gatgactggaagaagagcttgaacctgcctgctagggacaacagacagcagactgaggat
gtcacaaacaccaagggtctggagtttgaaaacttccaattgaagagagacttgttgatg
ggcatcttcgaggcgggtttcgagaagccgtcgcccattcaagaagaagccatccccgtc
gctctcaccggccgtgatatcctcgcccgtgccaagaatggtactggaaaaactgccgcc
ttcgttatccccgccctcgaaaagatcaaccccaaggtctccaagatccaagccctcatc
ctcgtccccactcgcgaactcgccatgcaaacatcacaagtctgcaagactctcggcaag
cacctcggaatcaacgtcatggtcaccaccggaggtactggtctccgagacgatatcatc
cgcctccaggaccccgtccatattgtggtcggtacccccggcagaatcctcgacctcgcg
ggcaagaacgttgccgacctcagcgagtgccccatgttcatcatggatgaggctgacaag
cttctctccatcgaattcacccccgtcatcgagcagctcctccagtttcaccccaaggac
cgccaggtcatgctcttctccgccaccttccccctctctgtcaaggacttctccgacaag
aacatggtcagcccgtacgagattaacctcatggacgagctcaccctgcgcggtattacc
cagtactacgcctttgtcgaggagaagcaaaaggtccactgcctcaacaccctcttctcc
aagcttcagattaaccagtccatcatcttctgcaactccaccaatcgtgtcgagctgctg
gccaagaagattaccgagctgggctactcatgcttctacagtcacgccaagatggcccaa
caagcaagaaatcgcgttttccacgacttccgcaacggcgtgtgccgcaaccttgtctgc
tccgatcttctcacccgtggtatcgatattcaagctgtgaatgtcgtcatcaactttgat
ttccccaagaacgctgagacctatctgcatcgcattggtcgctctggtcgttatggccac
ttgggtctggccatcaacctcatcaactgggatgacagattcaacctctacaacattgag
aaggaccttggaacagagatccagcccattcctgctagcatcgacaagtcgctctatgtc
tacgagaaccccgagtccatcccgagacccatttccaacttccgcaccggccagcctagc
cagggccagccgcagcagcagcaacaccagcagcctggtcagatccagggccagcaattg
cctctgcagggtggccccgcaccgggcaactggcagactcagcagccccagcaaggccag
cagaatggataccagggcggcggtagaggccgtggccgtggccgtggcggttaccgtggt
cagaaccgtggcggctatggcggccggggacgtggtcaaggccaaggccagggtcacccc
caaccccaaggacaaatacctatacgactcgtcgctaagcaacaaaagcttcgtcacata
ttcgcaaacttttggcctaacgaacaagacgacaggctgagccatcgaaaaaaacaaaca
tcaaccacggggcgtgacgtctggcgtcagacgagccaccacacccctggcatggaaata
acccgctcccatcttatcatgtcatgtgcttctttgacgacggcgtttgggggaaacaag
cggctgaaacggtatcagcccggaacggcgttcgcatggatggcgggccacatttga
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