Colletotrichum lupini: CLUP02_13087
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Entry
CLUP02_13087 CDS
T08561
Name
(RefSeq) 3' exoribonuclease
KO
K11600
exosome complex component RRP41
Organism
clup
Colletotrichum lupini
Pathway
clup03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clup00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CLUP02_13087
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clup03019
]
CLUP02_13087
Messenger RNA biogenesis [BR:
clup03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
CLUP02_13087
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
CLUP02_13087
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
DUF4438_C
Motif
Other DBs
NCBI-GeneID:
73347043
NCBI-ProteinID:
XP_049149179
UniProt:
A0A9Q8T222
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All DBs
Position
7:complement(join(131181..131694,131755..132087,132315..132400))
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AA seq
310 aa
AA seq
DB search
MGELPRDLGRDSAGHRKPRVQRGSEARALVQNKYTSRKIAGGPIMPLDTSTYSMALLRVD
GRRWNELRRLHAQIRTQEAADGSSYLEMGHTKVMCVVTGPAEPQRRGGAGGQSKEAAVTV
NLVVAGFSSVDRMKRGRNDKRSQELEATIAKAVSANLHTHLFPHSSITISLHVLSQDGSL
LAALLNASTLALIDAGIPMTDYIAACTAGSTSTYAAADDGADPLLDLNTQEEQELPYMTV
GTLGLTDRVAVMVCESRVQVSRLEGMLAVGVDGCKQVRQFMDRVVKEKGRQMVQEGTVEK
GTGLDLEMES
NT seq
933 nt
NT seq
+upstream
nt +downstream
nt
atgggagagcttccccgcgatctcgggagggacagtgcgggccataggaagcccagggtc
caaaggggttcagaggcccgagctctagttcagaataaatatacatccaggaaaattgca
ggtggcccaatcatgcctctagatacctccacttactccatggcgctcctgcgcgtcgat
ggccgccgctggaacgagctccgacgcctgcacgcccaaatccgtacccaggaagctgcc
gatggctcgagctacctcgagatgggccacacaaaggtcatgtgcgttgttacaggacct
gctgaaccccagcgtcgcgggggtgccggcggccagtccaaggaagctgccgttaccgtc
aacctcgtcgtcgccggcttcagctctgtcgaccgtatgaagcgaggccgcaacgacaag
cgatcacaagaactcgaggctaccattgccaaagctgtctcggcgaaccttcacacacat
ctcttcccccacagcagcatcaccatctctctacacgttttgtcccaggacggttccctt
ctggcggctcttctgaacgcttcgacactagcactaatcgatgctggcattcccatgacc
gactacattgctgcttgcactgccggctcgacctctacatacgcagccgccgatgatggt
gctgaccctctactcgatctcaacacccaggaagagcaggagctgccgtacatgacagtg
ggaacgctgggcctcacggaccgtgttgccgtaatggtgtgtgaaagccgtgtccaggtc
agccggttggagggtatgcttgctgttggtgtagatggatgcaaacaggtgcgacagttt
atggaccgcgtggtgaaggagaagggccgtcaaatggtacaagaaggtacggtagagaaa
ggcaccgggttggacttggaaatggaatcatga
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