Colletotrichum lupini: CLUP02_15108
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Entry
CLUP02_15108 CDS
T08561
Name
(RefSeq) Cdc73 family RNA pol II accessory factor
KO
K15175
parafibromin
Organism
clup
Colletotrichum lupini
Brite
KEGG Orthology (KO) [BR:
clup00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
clup03021
]
CLUP02_15108
Transcription machinery [BR:
clup03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
PAF1 complex
CLUP02_15108
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
CDC73_C
Motif
Other DBs
NCBI-GeneID:
73349042
NCBI-ProteinID:
XP_049151178
UniProt:
A0A9Q8T5L3
LinkDB
All DBs
Position
8:complement(join(2098100..2098747,2098805..2099436,2100081..2100201,2100327..2100364,2100415..2100857,2101090..2101228,2101395..2101519,2101574..2101704))
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AA seq
758 aa
AA seq
DB search
MASIHTVDGNDAVTERQSSRDGLPMSIVAFNDPFQDPVRTRRRTSSSQSYPISNRDAHRL
SFKTALRVTCPEVLQFAPGDSWDGSSPPKKDASRSGFLKDIGLSERSSLEKRAKAAQTSV
GDGPTDPQRFEIASTAVGINSWRKLWCSIDKPEHPEPEKHQTVFFVQEHDCQYIGVRPSG
VYSNVEQKQSSESISESLASEQLADVPKNISSSPISKTLTWFTNKEDQRSTATGTSWFGK
APWHRKDSYDTISSATSSVRDFLAGKTPPVTPDPEGFLSRQQDSTLTPYPAGTWFHLGKT
VTPGTLLNRPDLQALNETKRDATTISQKDPRSGFQKLYKSPILISLLFLLPIIMAANEQD
PLLLLWQSIASKRPAVPTASADASATEVPLSQATHLLFSHPAPVSVSLSTPTRFISSDRP
VDLRSIYFAWLNKDVAIPEYNASATRLNEELGSLGTVQNLAFVERLDLFTWLEGASEESE
HIKPLAGDKDGKEGASASASKTAPATAASRAGRGTLDPRLAVIYNGERKMGDRNSVLRGV
KHTDFSHVRKLAVPFIQKKPNGSSNISANPSLALNQKAPTRRPDPIILLSPSASSLLRLS
NIRSFLESGRYVQPDGSAAASMLHVSRVMKDIDPSRPMRFILVEGPEQFKPEYWNRVVAV
FTTGQSWQFKNYKWSSPPDLFRRILGIFIGWRGEQPPDSVKDWGHRVLQLGVDRWRDGTG
AQEAAKFRDKEAAESIWRAIEANMKNKGWTKTTAPTQL
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atggcctctattcatacagtcgacggcaatgatgcagtgacagaacgccagagctctagg
gatggcctgccgatgagtatcgtggcattcaatgacccttttcaggaccccgtccggact
cgcagacggacatcgtcttcgcagtcctatcccatatccaatcgcgacgctcacaggctg
tccttcaaaacggcgctcagagtcacttgtcctgaggttttgcaatttgcacctggagat
agctgggatggatccagccccccaaagaaggatgcgagtaggtctggtttcctgaaggat
attgggctgagcgagagatcatctctggaaaagcgcgccaaggcagcgcaaacaagcgtt
ggagatgggccaacagatccccaaagattcgaaatagctagcacagccgttggaatcaac
tcatggcgcaagctctggtgctccatcgataagccagagcatccagagccggaaaagcat
caaactgttttctttgttcaagaacatgactgtcagtacattggtgttagaccgagcggg
gtgtattctaatgtcgagcagaagcaatcgtccgagtcgatatccgaatctctagcctcc
gagcaactcgccgacgtgccgaagaatatctcaagctctccgatatccaaaacgctgact
tggttcaccaacaaagaagatcaaaggtctacggccacaggcacaagctggttcggcaag
gccccttggcaccgtaaagactcctacgacaccatcagcagtgccacaagttctgttcga
gactttttggcaggaaaaaccccacctgtcacgcctgatcccgagggcttcttgagtcgc
caacaagactctaccctgacgccgtaccctgctggaacatggttccacctggggaagaca
gtgacacctgggacgctgctcaaccggccagatctacaagcgttaaacgaaaccaaacga
gatgcgacgacaatctcccaaaaagacccaaggagtggctttcagaagctctataagagc
ccgatacttataagcctattgtttcttttacctatcattatggctgctaacgagcaggat
ccattgctcctgctgtggcaatccatcgcatcgaaacgacctgcggttcccacagcttca
gccgatgcttctgcgaccgaggttcctctctcgcaagctacccatctactcttctcgcac
ccagctcccgtttctgtatcgctctcgacaccgacgcgtttcatttcaagcgaccgcccg
gtcgacctgcgatccatctacttcgcctggctaaacaaggatgttgcaattcccgaatac
aacgcaagcgctacccgcctcaacgaagaattgggcagcctaggcactgtccaaaacctt
gccttcgtcgaacgtttagacttgttcacttggctggaaggcgctagtgaggagagtgaa
cacatcaagcctttggctggcgacaaggacggcaaggagggagctagtgcgagcgcgtcc
aagactgccccagcaactgcggccagtcgagctggacgaggcactttggatcctagattg
gcggtcatctacaatggagagcgcaagatgggggatcgcaactctgtgttgcgcggcgtg
aagcacacggacttctcccatgtccgcaagctcgctgttcctttcatccagaagaaaccc
aatggctcgtcgaacataagcgccaacccatccctcgcgctcaaccagaaggccccaacg
aggcgaccagacccgattatcctcctctcgccctcggcctcctccctgctgcgcctgtcc
aacatccgctcttttctcgagtcagggcgctacgtgcagcccgacggcagcgctgctgct
agcatgctgcacgtctcccgcgtcatgaaggatatcgacccgtcgcggcccatgcgtttc
attctcgtcgagggccccgagcagttcaaacccgagtactggaatcgcgttgttgcagtc
ttcaccactggccagtcatggcagttcaagaactacaagtggagctctcctccggatctg
ttccgccgtattttgggcatcttcatcggctggcgcggggagcaaccgccagacagcgta
aaggactggggccaccgcgtgttgcagctcggcgttgatcgctggcgtgatggaactggt
gctcaggaggcggccaagttcagagacaaggaagctgcagagtcgatctggcgggcaatt
gaggcgaacatgaagaacaagggatggacaaaaaccactgcgccaacccagctatga
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