Colletotrichum lupini: CLUP02_15144
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Entry
CLUP02_15144 CDS
T08561
Name
(RefSeq) NOT2/NOT3/NOT5 family protein
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
clup
Colletotrichum lupini
Pathway
clup03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clup00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CLUP02_15144
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clup03019
]
CLUP02_15144
Messenger RNA biogenesis [BR:
clup03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
CLUP02_15144
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
CLUP02_15144
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NOT2_3_5_C
CUE
Motif
Other DBs
NCBI-GeneID:
73349078
NCBI-ProteinID:
XP_049151214
UniProt:
A0A9Q8T653
LinkDB
All DBs
Position
8:complement(join(2196644..2196970,2197150..2197506,2198333..2198474,2198522..2198725,2198773..2199094,2199147..2199613,2199727..2199881,2200123..2200164))
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AA seq
671 aa
AA seq
DB search
MDLAGHLEEEYPWEVSLALVSSLPFIMGKRQRLVRKKAARQEKMDKALSSSPREKPKKGY
ADVLKTEFPSLSNNAQMNTTGQSNMWSSTASRNLGAGPVPRNQQSTPLSAQSGQDELFTP
TSARQGAFRFGGQSSAGPAPQAQSNPVDDFPPLNRNSNGEIGGERSANLMPSLGFGGSQA
SGSTAAIPPARSAGAGNGLLNALSANSRTSDGRSPSIASVQDQARIQEASGERGNSFSEE
NGGDSASQSAETRTPPGAIGNDAVTGNGKAKEEKEGQSPDVQDPLAGMAPIDKFGMKGLR
VLMNNYPSYGALMQGMDPNEFGLNVNSPDLISTQIYSLFDDTPPRPAIPSVRLPECYKVT
NVQPIETKIPSFNEETLFWIFYSCTQDVKQQLAAVELHSRNWRWHKKLHFWLTKDELMMP
ASLGPHHERGYYIVWDTTNWRKERREPANTPAFRHTNDFHRPERHDTDTESVAMANEQIS
LPYLVMILLVTAFVIRFLFFSPAPPPAPRQSAAAVLRTREAAVERIQQMFPQVDRRTILW
DLQRNGGNIQATSERILAGRMEAPPITFQPPPPPGANNAASSSSTPAKAPEKPTQPDLIT
RYKLQDKISAQQQRQAEADAAAVAEKEKEKAAKGWSSNRDERQSLLQKRRDEMILAARRK
MEAKIAAEKAA
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggatctggctgggcatttggaggaggagtacccatgggaggtctctctagctcttgtc
tcttctcttcctttcatcatgggcaaaaggcaacgtcttgtccgaaagaaagcagcgaga
caagaaaagatggataaagcattgtcttcttcgcctcgcgagaagcccaaaaagggctac
gcggatgtcctaaagaccgaatttccatctctctccaacaacgcccagatgaacaccacc
ggtcagtcaaacatgtggtcatcaacagcgtcgcggaacctgggtgctggcccagtgcca
cgcaaccagcagtcgacgccactgtcggctcagagcggccaggatgagctcttcacgcca
acttcggctcgccaaggcgcctttcgcttcggtggtcagagcagcgcaggcccggcgcct
caagcccagtctaatcctgtggacgattttccgcccttgaacagaaactcgaacggcgaa
atcggtggtgagcgaagtgctaacttgatgccctctttgggtttcggtggcagccaggcg
agcggctcaaccgccgcgatacctcctgcccgaagcgcaggtgccggcaacggtcttctc
aatgcgctctccgcaaatagcagaacttcagatggtcgctcaccttccatcgctagcgtg
caagatcaagcaagaatacaagaggcatctggcgaaagaggcaactctttctctgaagag
aatggtggcgacagcgcttctcagtccgcagagaccagaaccccccccggcgccattggt
aacgacgcagtcacaggcaatggcaaggccaaagaggagaaggaaggccaatcgcccgac
gtgcaggaccctctggcgggaatggcgcccattgacaaattcggcatgaagggtttacgt
gttctcatgaacaactaccccagctatggcgccctgatgcagggaatggatcccaacgag
ttcggactcaacgtcaactcaccagatctcatctccacgcagatttactctctcttcgac
gacacgcctccgcgtcccgcgattcccagcgtccggcttcctgagtgttacaaggtgacc
aatgtgcaaccgattgagaccaagatcccgtcattcaacgaggagaccctattctggatc
ttctacagctgtacacaggacgtcaagcaacaattggctgcggttgagttgcacagccga
aactggcgttggcacaagaagctgcatttctggttgactaaggacgagctcatgatgccc
gctagccttggtccccaccatgaacgcggctactacatcgtctgggacaccaccaactgg
cgcaaggagcggcgagagcctgcaaacactccggccttccgccataccaacgacttccac
cggccagagcggcacgacacagacacagaatccgttgccatggcaaacgagcagatctcg
ctgccgtatctggtgatgatactgctggttacggcattcgtgatacggttcctgttcttt
tcgcccgccccgccaccggcgccgcgacagagcgctgcagcggtactacgtacgcgcgag
gcagccgtggagaggatacagcagatgttcccgcaagtagacagacgaacgattctttgg
gatttgcagagaaacggcggaaatatccaggcgacgtctgagaggatcctcgcaggacgg
atggaagctcctccaatcactttccagccccctcccccgccgggagcgaataacgcagcg
tccagctcctcgacaccggccaaggcgcccgagaagcccacacagccggacctgattacg
agatacaagctccaagataagatctcggcgcaacaacagcggcaagcggaagcggacgcc
gccgccgtcgcggagaaggagaaggagaaggcggccaaggggtggagctcgaacagggac
gagaggcagtcgctgttgcagaagcggagggacgaaatgattcttgcggcgcggcggaag
atggaggctaagattgctgctgaaaaggcggcataa
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